DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kap-alpha3 and imp1

DIOPT Version :9

Sequence 1:NP_001163572.1 Gene:Kap-alpha3 / 41158 FlyBaseID:FBgn0027338 Length:514 Species:Drosophila melanogaster
Sequence 2:NP_596632.1 Gene:imp1 / 2539928 PomBaseID:SPBC1604.08c Length:539 Species:Schizosaccharomyces pombe


Alignment Length:514 Identity:233/514 - (45%)
Similarity:330/514 - (64%) Gaps:21/514 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 NRLQNFKNKGK-DQDEMRRRRNEVTVELRKNKREETILKRRNV-PNLDSNTD-EEEQLSSSIDLK 68
            :|...||:||. ..||:||:|.|..:|:||.||||::.||||: ..|.::.| |||...|.:.::
pombe     8 DRRSRFKSKGVFKADELRRQREEQQIEIRKQKREESLNKRRNLNAVLQNDIDVEEEADQSQVQME 72

  Fly    69 -----KLAKAAADATKP--EQQLAAVQAARKLLSSDKNPPINDLIQSDILPILVECLKQHNHTML 126
                 :..|..||....  |.||.||...||.||.:.:|||:.:|...::...|:.|:..:| :|
pombe    73 QQMKDEFPKLTADVMSDDIELQLGAVTKFRKYLSKETHPPIDQVIACGVVDRFVQFLESEHH-LL 136

  Fly   127 QFEAAWALTNIASGTSAQTNEVVAAGAVPLFLQLLNSPAPNVCEQAVWALGNIIGDGPLLRDFVI 191
            |||||||||||||||:.||..||.:||||.|:|||:||..:|.||.|||||||.||....||:|:
pombe   137 QFEAAWALTNIASGTTDQTRIVVDSGAVPRFIQLLSSPEKDVREQVVWALGNIAGDSSACRDYVL 201

  Fly   192 KHGVVQPLLSFIKPDI-PITFLRNVTWVIVNLCRNKDPAPPTATIHEILPALNVLIHHTDTNILV 255
            .:||:||||:.::... .::.|||.||.:.||||.|:|.|..:||...:|.|..|::..|..|:|
pombe   202 GNGVLQPLLNILQSSASDVSMLRNATWTLSNLCRGKNPPPNWSTISVAVPILAKLLYSEDVEIIV 266

  Fly   256 DTVWAISYLTDGGNDQIQMVIESGVVPKLIPLLGNSEVKVQTAALRAVGNIVTGSDEQTQVVLNY 320
            |..||||||:||.|::|..:::.|..|:|:.||.:..|.:||.|||:|||||||:|.|||::::.
pombe   267 DACWAISYLSDGPNEKIGAILDVGCAPRLVELLSSPSVNIQTPALRSVGNIVTGTDAQTQIIIDC 331

  Fly   321 DALSYFPGLLSHPKEKIRKEAVWFLSNITAGNQSQVQAVINVGLLPKIIENLSKGEFQTQKEAAW 385
            .||:.||.||||.||.|||||.|.:|||||||..|:||:|...|:|.::..||..:::|:|||.|
pombe   332 GALNAFPSLLSHQKENIRKEACWTISNITAGNTQQIQAIIESNLIPPLVHLLSYADYKTKKEACW 396

  Fly   386 AISNLTIS--GNREQVFTLIKEGVIPPFCDLLSCQDTQVINVVLDGLNNMLKVAD-------SHV 441
            ||||.|..  |..:|:..|:.:|||.|.||:|:..|.::|.|.||.:.|:|||.:       .::
pombe   397 AISNATSGGLGQPDQIRYLVSQGVIKPLCDMLNGSDNKIIQVALDAIENILKVGEMDRTMDLENI 461

  Fly   442 EAVANCIEECEGLAKIERLQSHENVEIYKLAYEIIDQYFTDEGEQTNMAPTSDGAQYNF 500
            ...|..:||..|:..|..|||..|.:||..||.||::||:||....::||.::...:.|
pombe   462 NQYAVYVEEAGGMDMIHDLQSSGNNDIYLKAYSIIEKYFSDEDAVEDLAPETENGAFTF 520

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kap-alpha3NP_001163572.1 IBB 7..88 CDD:280005 35/90 (39%)
SRP1 8..500 CDD:227396 232/511 (45%)
ARM 104..224 CDD:237987 62/120 (52%)
armadillo repeat 104..137 CDD:293788 14/32 (44%)
armadillo repeat 145..181 CDD:293788 23/35 (66%)
armadillo repeat 187..222 CDD:293788 14/35 (40%)
ARM 236..350 CDD:237987 58/113 (51%)
armadillo repeat 239..264 CDD:293788 11/24 (46%)
armadillo repeat 272..308 CDD:293788 16/35 (46%)
armadillo repeat 314..348 CDD:293788 19/33 (58%)
ARM 315..433 CDD:237987 57/119 (48%)
armadillo repeat 356..390 CDD:293788 15/33 (45%)
armadillo repeat 399..433 CDD:293788 13/33 (39%)
Arm_3 442..485 CDD:292804 19/42 (45%)
imp1NP_596632.1 SRP1 1..531 CDD:227396 233/514 (45%)
IBB 9..99 CDD:280005 35/89 (39%)
ARM 114..235 CDD:237987 62/121 (51%)
armadillo repeat 115..147 CDD:293788 14/32 (44%)
armadillo repeat 155..191 CDD:293788 23/35 (66%)
armadillo repeat 197..233 CDD:293788 14/35 (40%)
ARM 249..361 CDD:237987 58/111 (52%)
armadillo repeat 250..275 CDD:293788 11/24 (46%)
armadillo repeat 285..317 CDD:293788 13/31 (42%)
ARM 326..446 CDD:237987 57/119 (48%)
armadillo repeat 327..359 CDD:293788 17/31 (55%)
armadillo repeat 367..403 CDD:293788 16/35 (46%)
armadillo repeat 412..446 CDD:293788 13/33 (39%)
Arm_3 462..508 CDD:292804 19/45 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 52 1.000 Domainoid score I3295
eggNOG 1 0.900 - - E1_COG5064
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54553
OrthoFinder 1 1.000 - - FOG0000157
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23316
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2158
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
76.950

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