DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Kap-alpha3 and Kpna3

DIOPT Version :9

Sequence 1:NP_001163572.1 Gene:Kap-alpha3 / 41158 FlyBaseID:FBgn0027338 Length:514 Species:Drosophila melanogaster
Sequence 2:NP_032492.1 Gene:Kpna3 / 16648 MGIID:1100863 Length:521 Species:Mus musculus


Alignment Length:517 Identity:351/517 - (67%)
Similarity:417/517 - (80%) Gaps:8/517 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 MEQNRLQNFKNKGKDQDEMRRRRNEVTVELRKNKREETILKRRNVPNLDSNTDEE---EQLSSSI 65
            :|.:|:::|||||:|.:.|||.|||||||||||||:|.:||:||||..:|..|.:   :..:.::
Mouse     7 LENHRIKSFKNKGRDVETMRRHRNEVTVELRKNKRDEHLLKKRNVPQEESLEDSDVDADFKAQNV 71

  Fly    66 DLKKLAKAAADATKPEQQLAAVQAARKLLSSDKNPPINDLIQSDILPILVECLKQHNHTMLQFEA 130
            .|:.:.:.|. :..|..||:||||||||||||:||||:|||:|.||||||:||::.::..|||||
Mouse    72 TLEAILQNAT-SDNPVVQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVKCLERDDNPSLQFEA 135

  Fly   131 AWALTNIASGTSAQTNEVVAAGAVPLFLQLLNSPAPNVCEQAVWALGNIIGDGPLLRDFVIKHGV 195
            |||||||||||||||..||.:.||||||:||:||..||||||||||||||||||..||:||..||
Mouse   136 AWALTNIASGTSAQTQAVVQSNAVPLFLRLLHSPHQNVCEQAVWALGNIIGDGPQCRDYVISLGV 200

  Fly   196 VQPLLSFIKPDIPITFLRNVTWVIVNLCRNKDPAPPTATIHEILPALNVLIHHTDTNILVDTVWA 260
            |:||||||.|.||||||||||||||||||||||.||..|:.||||||.|||:|||.|||||||||
Mouse   201 VKPLLSFINPSIPITFLRNVTWVIVNLCRNKDPPPPMETVQEILPALCVLIYHTDINILVDTVWA 265

  Fly   261 ISYLTDGGNDQIQMVIESGVVPKLIPLLGNSEVKVQTAALRAVGNIVTGSDEQTQVVLNYDALSY 325
            :||||||||:||||||:|||||.|:|||.:.||||||||||||||||||:|||||||||.|.||:
Mouse   266 LSYLTDGGNEQIQMVIDSGVVPFLVPLLSHQEVKVQTAALRAVGNIVTGTDEQTQVVLNCDVLSH 330

  Fly   326 FPGLLSHPKEKIRKEAVWFLSNITAGNQSQVQAVINVGLLPKIIENLSKGEFQTQKEAAWAISNL 390
            ||.|||||||||.|||||||||||||||.||||||:.||:|.||..|:||:|.||||||||||||
Mouse   331 FPNLLSHPKEKINKEAVWFLSNITAGNQQQVQAVIDAGLIPMIIHQLAKGDFGTQKEAAWAISNL 395

  Fly   391 TISGNREQVFTLIKEGVIPPFCDLLSCQDTQVINVVLDGLNNMLKVADSHVEAVANCIEECEGLA 455
            ||||.::||..|:::.||||||:|||.:|:||:.||||||.|:|.:|......:|..||||.||.
Mouse   396 TISGRKDQVEYLVQQNVIPPFCNLLSVKDSQVVQVVLDGLKNILIMAGDEASTIAEIIEECGGLE 460

  Fly   456 KIERLQSHENVEIYKLAYEIIDQYFT--DEGEQTNMAP-TSDGAQYNFDPHADRLTMNSFNF 514
            |||.||.|||.:|||||:|||||||:  |..|..::.| .:.|..|||||.|: |....|||
Mouse   461 KIEVLQQHENEDIYKLAFEIIDQYFSGDDIDEDPSLIPEATQGGTYNFDPTAN-LQTKEFNF 521

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kap-alpha3NP_001163572.1 IBB 7..88 CDD:280005 38/83 (46%)
SRP1 8..500 CDD:227396 341/497 (69%)
ARM 104..224 CDD:237987 92/119 (77%)
armadillo repeat 104..137 CDD:293788 22/32 (69%)
armadillo repeat 145..181 CDD:293788 26/35 (74%)
armadillo repeat 187..222 CDD:293788 28/34 (82%)
ARM 236..350 CDD:237987 95/113 (84%)
armadillo repeat 239..264 CDD:293788 20/24 (83%)
armadillo repeat 272..308 CDD:293788 29/35 (83%)
armadillo repeat 314..348 CDD:293788 28/33 (85%)
ARM 315..433 CDD:237987 86/117 (74%)
armadillo repeat 356..390 CDD:293788 24/33 (73%)
armadillo repeat 399..433 CDD:293788 20/33 (61%)
Arm_3 442..485 CDD:292804 28/44 (64%)
Kpna3NP_032492.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..29 11/21 (52%)
SRP1 7..521 CDD:227396 349/515 (68%)
Nuclear localization signal. /evidence=ECO:0000250 43..52 5/8 (63%)
ARM 1, truncated 66..106 18/40 (45%)
armadillo repeat 73..98 CDD:293788 11/25 (44%)
ARM 2 107..149 30/41 (73%)
armadillo repeat 109..142 CDD:293788 22/32 (69%)
NLS binding site (major). /evidence=ECO:0000250 137..229 74/91 (81%)
armadillo repeat 150..186 CDD:293788 26/35 (74%)
armadillo repeat 192..227 CDD:293788 28/34 (82%)
ARM 4 195..233 32/37 (86%)
ARM 5 234..278 33/43 (77%)
armadillo repeat 244..269 CDD:293788 20/24 (83%)
armadillo repeat 277..313 CDD:293788 29/35 (83%)
ARM 6 279..318 31/38 (82%)
NLS binding site (minor). /evidence=ECO:0000250 306..394 71/87 (82%)
armadillo repeat 319..353 CDD:293788 28/33 (85%)
ARM 8 361..400 29/38 (76%)
armadillo repeat 361..395 CDD:293788 24/33 (73%)
ARM 9 401..443 23/41 (56%)
armadillo repeat 404..438 CDD:293788 20/33 (61%)
ARM 10, atypical 447..485 25/37 (68%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167834124
Domainoid 1 1.000 75 1.000 Domainoid score I9032
eggNOG 1 0.900 - - E1_COG5064
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 677 1.000 Inparanoid score I720
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54553
OrthoDB 1 1.010 - - D1111872at2759
OrthoFinder 1 1.000 - - FOG0000157
OrthoInspector 1 1.000 - - otm42443
orthoMCL 1 0.900 - - OOG6_104544
Panther 1 1.100 - - LDO PTHR23316
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2158
SonicParanoid 1 1.000 - - X2405
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.800

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