DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kap-alpha3 and kpna4

DIOPT Version :9

Sequence 1:NP_001163572.1 Gene:Kap-alpha3 / 41158 FlyBaseID:FBgn0027338 Length:514 Species:Drosophila melanogaster
Sequence 2:XP_002933281.2 Gene:kpna4 / 100380091 XenbaseID:XB-GENE-1011058 Length:520 Species:Xenopus tropicalis


Alignment Length:515 Identity:347/515 - (67%)
Similarity:409/515 - (79%) Gaps:5/515 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 MEQNRLQNFKNKGKDQDEMRRRRNEVTVELRKNKREETILKRRNVPNLDSNTDEEEQLSSSIDLK 68
            ::..||:||||||:|.:.|||:||||.||||||||:|.:|||||||:.|...|.:......:...
 Frog     7 LDNQRLKNFKNKGRDLESMRRQRNEVVVELRKNKRDEHLLKRRNVPHEDICEDSDVDADFRVQNT 71

  Fly    69 KLAKAAADATKPEQ--QLAAVQAARKLLSSDKNPPINDLIQSDILPILVECLKQHNHTMLQFEAA 131
            .|.....:|:...|  ||:||||||||||||:||||:|||:|.||||||.||::.::..||||||
 Frog    72 SLEAIVQNASSDHQGIQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVHCLERDDNPSLQFEAA 136

  Fly   132 WALTNIASGTSAQTNEVVAAGAVPLFLQLLNSPAPNVCEQAVWALGNIIGDGPLLRDFVIKHGVV 196
            |||||||||||.||..||.:.||||||:||:||..||||||||||||||||||..||:||..|||
 Frog   137 WALTNIASGTSEQTQAVVQSNAVPLFLRLLHSPHQNVCEQAVWALGNIIGDGPQCRDYVISLGVV 201

  Fly   197 QPLLSFIKPDIPITFLRNVTWVIVNLCRNKDPAPPTATIHEILPALNVLIHHTDTNILVDTVWAI 261
            :||||||.|.||||||||||||:|||||:|||.||..||.||||||.|||||||.|||||||||:
 Frog   202 KPLLSFINPSIPITFLRNVTWVMVNLCRHKDPPPPMETIQEILPALCVLIHHTDVNILVDTVWAL 266

  Fly   262 SYLTDGGNDQIQMVIESGVVPKLIPLLGNSEVKVQTAALRAVGNIVTGSDEQTQVVLNYDALSYF 326
            |||||.||:||||||:||:|..|:|||.|.||||||||||||||||||:|||||||||.|||.:|
 Frog   267 SYLTDAGNEQIQMVIDSGIVTNLVPLLSNPEVKVQTAALRAVGNIVTGTDEQTQVVLNCDALLHF 331

  Fly   327 PGLLSHPKEKIRKEAVWFLSNITAGNQSQVQAVINVGLLPKIIENLSKGEFQTQKEAAWAISNLT 391
            |.||:|.||||.|||||||||||||||.||||||:..|:|.||..|.||:|.|||||||||||||
 Frog   332 PALLTHAKEKINKEAVWFLSNITAGNQQQVQAVIDANLVPMIIHLLDKGDFGTQKEAAWAISNLT 396

  Fly   392 ISGNREQVFTLIKEGVIPPFCDLLSCQDTQVINVVLDGLNNMLKVADSHVEAVANCIEECEGLAK 456
            |||.::||..||::.||||||:||:.:|.|||.||||||:|:||:||...|.:||.||||.||.|
 Frog   397 ISGRKDQVAYLIQQNVIPPFCNLLTVKDPQVIQVVLDGLSNILKMADEDSETIANLIEECGGLEK 461

  Fly   457 IERLQSHENVEIYKLAYEIIDQYF-TDEGEQTNMAP-TSDGAQYNFDPHADRLTMNSFNF 514
            ||:||||||.:|||||:|||||:| :|..|.:|:.| |..|..::|:..|: :....|.|
 Frog   462 IEQLQSHENEDIYKLAFEIIDQFFSSDIDEDSNLVPETIQGGTFSFNSSAN-VPAEGFQF 520

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kap-alpha3NP_001163572.1 IBB 7..88 CDD:280005 40/82 (49%)
SRP1 8..500 CDD:227396 343/495 (69%)
ARM 104..224 CDD:237987 90/119 (76%)
armadillo repeat 104..137 CDD:293788 22/32 (69%)
armadillo repeat 145..181 CDD:293788 26/35 (74%)
armadillo repeat 187..222 CDD:293788 27/34 (79%)
ARM 236..350 CDD:237987 92/113 (81%)
armadillo repeat 239..264 CDD:293788 21/24 (88%)
armadillo repeat 272..308 CDD:293788 28/35 (80%)
armadillo repeat 314..348 CDD:293788 26/33 (79%)
ARM 315..433 CDD:237987 84/117 (72%)
armadillo repeat 356..390 CDD:293788 23/33 (70%)
armadillo repeat 399..433 CDD:293788 21/33 (64%)
Arm_3 442..485 CDD:292804 30/43 (70%)
kpna4XP_002933281.2 SRP1 11..519 CDD:227396 345/508 (68%)
armadillo repeat 73..98 CDD:293788 11/24 (46%)
armadillo repeat 109..142 CDD:293788 22/32 (69%)
armadillo repeat 150..186 CDD:293788 26/35 (74%)
armadillo repeat 192..227 CDD:293788 27/34 (79%)
armadillo repeat 244..269 CDD:293788 21/24 (88%)
armadillo repeat 279..311 CDD:293788 24/31 (77%)
armadillo repeat 319..355 CDD:293788 28/35 (80%)
armadillo repeat 361..395 CDD:293788 23/33 (70%)
armadillo repeat 404..438 CDD:293788 21/33 (64%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 77 1.000 Domainoid score I8696
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H20521
Inparanoid 1 1.050 667 1.000 Inparanoid score I752
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1111872at2759
OrthoFinder 1 1.000 - - FOG0000157
OrthoInspector 1 1.000 - - otm47547
Panther 1 1.100 - - LDO PTHR23316
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2405
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.160

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