DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Kap-alpha3 and kpna6

DIOPT Version :9

Sequence 1:NP_001163572.1 Gene:Kap-alpha3 / 41158 FlyBaseID:FBgn0027338 Length:514 Species:Drosophila melanogaster
Sequence 2:XP_001923921.1 Gene:kpna6 / 100149852 ZFINID:ZDB-GENE-130530-626 Length:537 Species:Danio rerio


Alignment Length:525 Identity:242/525 - (46%)
Similarity:322/525 - (61%) Gaps:46/525 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 RLQNFKNKGKDQDEMRRRRNEVTVELRKNKREETILKRRNV------------PNLDS------- 53
            |:..:|||..:.:||||||.|..::|||.|||:.:.|||||            |.:||       
Zfish    13 RMNRYKNKALNLEEMRRRREEEGIQLRKQKREQQLFKRRNVELLGEEGGMFDSPLMDSYVSSTTA 77

  Fly    54 -----NTDEEEQLSSSIDLKKLAKAAADATKPEQQLAAVQAARKLLSSDKNPPINDLIQS-DILP 112
                 ..|..|.|.|.              .||.||...|..|||||.:.||||:::|.: .::.
Zfish    78 PDGVITRDMVEMLFSE--------------DPELQLVTTQRFRKLLSKEPNPPIDEVISTPGVVN 128

  Fly   113 ILVECLKQHNHTMLQFEAAWALTNIASGTSAQTNEVVAAGAVPLFLQLLNSPAPNVCEQAVWALG 177
            ..||.|::..:..|||||||||||||||||.||..|:.|||||:|::||||...:|.||||||||
Zfish   129 RFVEFLQKSTNCTLQFEAAWALTNIASGTSQQTKFVIEAGAVPVFIELLNSDFEDVQEQAVWALG 193

  Fly   178 NIIGDGPLLRDFVIKHGVVQPLLSFIKPDIPITFLRNVTWVIVNLCRNKDPAPPTATIHEILPAL 242
            ||.||..:.||:|:...::.|||..:.....:|..||..|.:.||||.|.|.|....:...||.|
Zfish   194 NIAGDSAVCRDYVLNCNILPPLLVLLTKSTRLTMTRNAVWALSNLCRGKSPPPDFEKVSPCLPVL 258

  Fly   243 NVLIHHTDTNILVDTVWAISYLTDGGNDQIQMVIESGVVPKLIPLLGNSEVKVQTAALRAVGNIV 307
            :.|:..:|:::|.|..||:|||:||.|::||.||:|||..:|:.||.:|:.||.:.:||||||||
Zfish   259 SRLLFSSDSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHSDYKVASPSLRAVGNIV 323

  Fly   308 TGSDEQTQVVLNYDALSYFPGLLSHPKEKIRKEAVWFLSNITAGNQSQVQAVINVGLLPKIIENL 372
            ||.|.|||||||..||.....|||..||.|||||.|.:|||||||::|:||||:..:.|.:||.|
Zfish   324 TGDDIQTQVVLNCSALPCLLHLLSSAKESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEIL 388

  Fly   373 SKGEFQTQKEAAWAISNLTISGNREQVFTLIKEGVIPPFCDLLSCQDTQVINVVLDGLNNMLKVA 437
            .|.||:|:|||||||:|.|..|..||:..|:..|.|.|.||||:..|::::.|.|:||.|:|::.
Zfish   389 QKAEFRTRKEAAWAITNATSGGTPEQIRYLVNLGCIKPLCDLLTVMDSKIVLVALNGLENILRLG 453

  Fly   438 D-------SHVEAVANCIEECEGLAKIERLQSHENVEIYKLAYEIIDQYFTDEGEQTNMAPTSDG 495
            :       |.:....:.|||..||.|||.||||||.|||:.|:::|:.||..|.|..|:.|..|.
Zfish   454 EQEAKQNGSGLNPYCSLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGVEEEDANLVPQVDE 518

  Fly   496 AQYNF 500
            .|..|
Zfish   519 NQQQF 523

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kap-alpha3NP_001163572.1 IBB 7..88 CDD:280005 33/103 (32%)
SRP1 8..500 CDD:227396 241/523 (46%)
ARM 104..224 CDD:237987 59/120 (49%)
armadillo repeat 104..137 CDD:293788 14/33 (42%)
armadillo repeat 145..181 CDD:293788 23/35 (66%)
armadillo repeat 187..222 CDD:293788 10/34 (29%)
ARM 236..350 CDD:237987 62/113 (55%)
armadillo repeat 239..264 CDD:293788 10/24 (42%)
armadillo repeat 272..308 CDD:293788 20/35 (57%)
armadillo repeat 314..348 CDD:293788 20/33 (61%)
ARM 315..433 CDD:237987 63/117 (54%)
armadillo repeat 356..390 CDD:293788 19/33 (58%)
armadillo repeat 399..433 CDD:293788 13/33 (39%)
Arm_3 442..485 CDD:292804 22/42 (52%)
kpna6XP_001923921.1 IBB 9..103 CDD:280005 33/103 (32%)
SRP1 36..536 CDD:227396 231/502 (46%)
ARM 119..240 CDD:237987 59/120 (49%)
armadillo repeat 127..153 CDD:293788 13/25 (52%)
armadillo repeat 161..197 CDD:293788 23/35 (66%)
armadillo repeat 203..238 CDD:293788 10/34 (29%)
ARM 252..366 CDD:237987 62/113 (55%)
armadillo repeat 255..280 CDD:293788 10/24 (42%)
armadillo repeat 288..324 CDD:293788 20/35 (57%)
armadillo repeat 330..364 CDD:293788 20/33 (61%)
ARM 331..449 CDD:237987 63/117 (54%)
armadillo repeat 372..408 CDD:293788 20/35 (57%)
armadillo repeat 415..449 CDD:293788 13/33 (39%)
Arm_3 465..511 CDD:292804 23/45 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5064
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54553
OrthoDB 1 1.010 - - D1111872at2759
OrthoFinder 1 1.000 - - FOG0000157
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2158
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
76.860

Return to query results.
Submit another query.