DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG16790 and Usb1

DIOPT Version :9

Sequence 1:NP_649911.1 Gene:CG16790 / 41155 FlyBaseID:FBgn0037713 Length:258 Species:Drosophila melanogaster
Sequence 2:XP_038953625.1 Gene:Usb1 / 307643 RGDID:1305215 Length:276 Species:Rattus norvegicus


Alignment Length:286 Identity:104/286 - (36%)
Similarity:144/286 - (50%) Gaps:52/286 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 GSSSSASEDE----------------DCTENIQTPALITLKRPALPKAATLLGPKKPKPEEFVED 56
            |.|||.||||                .|.:|       .|.....|...::|. ..|..||..| 
  Rat     8 GYSSSGSEDEAEAVAAGRSKPGSGLHRCGQN-------PLPSQRFPVPDSVLN-MFPSTEEGPE- 63

  Fly    57 VVDDPAEHGGRMRSFKHERGNWATYVYVPATACVDQLEEFQTEAIARLEPHLE-----LQPNESL 116
              ||.|.||||:|:|.||||||||::|:|..|    .|||| :.:..|.|..:     |...|..
  Rat    64 --DDSARHGGRIRTFPHERGNWATHIYIPYEA----NEEFQ-DLLDVLLPRAQMFAPRLVQMEEF 121

  Fly   117 HLSLSRTVVLQYHQIDEFSRSLQSALNSSAGFAATLQGLRIYTNEERTRTFIAAPLDAAFVEKMT 181
            |||||::|||::|.|..|.:.|:..:.|...|..|...::||||:|:|||||...:.:...:.:.
  Rat   122 HLSLSQSVVLRHHWILPFVQVLKDRMASFQRFFFTANRVKIYTNQEKTRTFIGLEVSSGHAQFLD 186

  Fly   182 AILQPIDQVMLDYRLQQFYDPASFHVSLLWCVGD----------QETLLNEKLTELKELLDD-QD 235
            .:.: :|:||.::.|..||...||||||.|||||          ||..|:.....|||::|: :|
  Rat   187 MVSE-VDRVMKEFDLTTFYQDPSFHVSLAWCVGDARLQLEGQCQQELQLSSPCCWLKEIVDEFED 250

  Fly   236 K---LCLAVNEVHLKCGNKDFTYSLK 258
            .   |.:...:|..|.|||.|:..||
  Rat   251 SEMLLRVLAEQVRCKSGNKFFSMPLK 276

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG16790NP_649911.1 HVSL 34..254 CDD:286792 90/238 (38%)
Usb1XP_038953625.1 HVSL 46..274 CDD:401628 91/237 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166349612
Domainoid 1 1.000 133 1.000 Domainoid score I4953
eggNOG 1 0.900 - - E1_KOG3102
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H11611
Inparanoid 1 1.050 138 1.000 Inparanoid score I4442
OMA 1 1.010 - - QHG52902
OrthoDB 1 1.010 - - D1507496at2759
OrthoFinder 1 1.000 - - FOG0007343
OrthoInspector 1 1.000 - - oto97686
orthoMCL 1 0.900 - - OOG6_103799
Panther 1 1.100 - - LDO PTHR13522
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X5460
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.770

Return to query results.
Submit another query.