DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG16789 and AtCDC48B

DIOPT Version :10

Sequence 1:NP_649910.3 Gene:CG16789 / 41154 FlyBaseID:FBgn0037712 Length:831 Species:Drosophila melanogaster
Sequence 2:NP_190891.1 Gene:AtCDC48B / 824489 AraportID:AT3G53230 Length:815 Species:Arabidopsis thaliana


Alignment Length:503 Identity:110/503 - (21%)
Similarity:178/503 - (35%) Gaps:145/503 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   355 ESEHSRSSARSSKESRKTKDKSKSPARSGDLNVNE--NQDEEVSFQPAPSVCL-PDIRAEIDLF- 415
            ::|.|.|.......|....:|.|:..|   |.|:|  |.|..|       |.| ||...::.|| 
plant     4 QAESSDSKGTKKDFSTAILEKKKAANR---LVVDEAINDDNSV-------VSLHPDTMEKLQLFR 58

  Fly   416 NDT-----WRDKDET--GVLSQAAYEDMIYSDKYQEVELEFRRAVDDVMR----------QEIEL 463
            .||     .:.||..  .:..:...|..|..:|.....|..|  :.||:.          ..:.:
plant    59 GDTILIKGKKRKDTVCIALADETCDEPKIRMNKVVRSNLRVR--LGDVISVHQCPDVKYGNRVHI 121

  Fly   464 L---QTAVG------------------KKVKKSSKKTRRSGKKSKKKK--EKD------LTPD-- 497
            |   .|..|                  :.|:|......|.|.:|.:.|  |.|      :.||  
plant   122 LPLDDTIEGVSGNIFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSIEFKVIETDPAEYCVVAPDTE 186

  Fly   498 --------------RTTESLYEELVTNGI------IRKYPELRLKQFLGDKALTARIGTNPSPGD 542
                          |..|..|:::  .|:      ||:..||.|:.    ..|...||..|..| 
plant   187 IFCEGEPIKREDEERLDEVGYDDV--GGVRKQMAQIRELVELPLRH----PQLFKSIGVKPPKG- 244

  Fly   543 IRQILTEYCILPLGSDAIHNCTPLIRSILLAGPKGSGKKALLHAICTEVGAVLFDLTPANIVGKY 607
                                       |||.||.||||..:..|:..|.||..|.:....|:.|.
plant   245 ---------------------------ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL 282

  Fly   608 PGKSGLIMLIHLVLKVSRLLQPAVIFMGDAERPFMKKIPKTDRTD---PKRLKKDLPKLIKNIAP 669
            .|:|.  ..:....:.:....|::||:.:.:    ...||.::|.   .:|:...|..|:..:..
plant   283 AGESE--SNLRKAFEEAEKNAPSIIFIDEID----SIAPKREKTHGEVERRIVSQLLTLMDGLKS 341

  Fly   670 EDRVVFIGTSNLPWEADQKLLQ-SVYNRFIYIPRPD-YGAMS----HAWKTLLHDYSGGISNLDT 728
            ...|:.:|.:|.|...|..|.: ..::|.|.|..|| .|.:.    |.....|.:      ::|.
plant   342 RAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAE------DVDL 400

  Fly   729 SAMAKISDGYTIGSIDA-CLKEVMTCKRK----LQLRTQPLTNAELIN 771
            ..::|.:.||....:.| |.:..:.|.|:    :.|..:.: :||::|
plant   401 ERVSKDTHGYVGADLAALCTEAALQCIREKMDVIDLDDEEI-DAEILN 447

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG16789NP_649910.3 DUF5401 <131..>307 CDD:375164
SpoVK 443..773 CDD:440232 84/404 (21%)
P-loop containing Nucleoside Triphosphate Hydrolases 542..700 CDD:476819 35/161 (22%)
AtCDC48BNP_190891.1 CDC48 30..767 CDD:273521 104/477 (22%)
Blue background indicates that the domain is not in the aligned region.

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