DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG16789 and pch2

DIOPT Version :10

Sequence 1:NP_649910.3 Gene:CG16789 / 41154 FlyBaseID:FBgn0037712 Length:831 Species:Drosophila melanogaster
Sequence 2:NP_524282.4 Gene:pch2 / 41013 FlyBaseID:FBgn0051453 Length:421 Species:Drosophila melanogaster


Alignment Length:391 Identity:78/391 - (19%)
Similarity:137/391 - (35%) Gaps:119/391 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   381 RSGDLNVN--ENQDE---EVSFQPAPSV-----CLPDIRAE-IDLFNDTWRDKDETGV----LSQ 430
            |..||..|  .|..|   :..||.|..:     .|||:.|| .:..:....::|..||    :::
  Fly    17 RGNDLRSNAIRNNVETALKAYFQTARKLPRNVSFLPDLTAEQTEHVHSVLLERDNGGVQPLKVAE 81

  Fly   431 AAYEDMIYSDKYQEVEL------EFRRAVDDVMRQEIELLQTA--VGKKVKKSSKKTRRSGKKSK 487
            ..:....|:.:.:|.:|      |....:|.::.....||..|  ||                  
  Fly    82 TKFRFHFYATRPEEGQLGLFSGEEGSDGIDSIVAASHALLPAAQFVG------------------ 128

  Fly   488 KKKEKDLTPDRTTESLYEELVTNGIIRKYPELRLKQFLGDKALTA------RIGTNPSPGDIRQI 546
                           |:|.|:.        |..||:.|...||:|      |:.||         
  Fly   129 ---------------LWENLIY--------ETGLKEKLLKFALSALMFSEHRVDTN--------- 161

  Fly   547 LTEYCILPLGSDAIHNCTPLIRSILLAGPKGSGKKALLHAICTEVG---------AVLFDLTPAN 602
                         :..|.   |.|||.||.|:||.:|..|:..::.         ..|.::...:
  Fly   162 -------------VIACN---RLILLHGPPGTGKTSLCKALAQKLSIRTQGSYAYTHLVEINSHS 210

  Fly   603 IVGKYPGKSGLIMLIHLVLKVSRLLQP----AVIFMGDAE-----RPFMKKIPKTDRTDPKRLKK 658
            :..|:..:||. ::..|..|::.|:..    ..:.:.:.|     |..|.   ..:..|..|:..
  Fly   211 LFSKWFSESGK-LVAQLFNKIAELVSDPNNLVCVLIDEVESLAYARSAMS---SNEPRDAMRVVN 271

  Fly   659 DLPKLIKNIAPEDRVVFIGTSNLPWEADQKLLQSVYNRFIYIPRPDYGAMSHAWKTLLHD-YSGG 722
            .:...:.::.....|:.:.||||....|...:.....| ::|..|...|:...:|.:|.: .|.|
  Fly   272 AVLTQLDSLKTCPNVLILATSNLAQSIDLAFVDRADIR-LFIGYPGISAIREIYKGMLAELMSAG 335

  Fly   723 I 723
            :
  Fly   336 V 336

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG16789NP_649910.3 DUF5401 <131..>307 CDD:375164
SpoVK 443..773 CDD:440232 60/314 (19%)
P-loop containing Nucleoside Triphosphate Hydrolases 542..700 CDD:476819 31/175 (18%)
pch2NP_524282.4 RecA-like_Pch2-like 115..312 CDD:410916 49/267 (18%)
Blue background indicates that the domain is not in the aligned region.

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