DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG16789 and trip13

DIOPT Version :10

Sequence 1:NP_649910.3 Gene:CG16789 / 41154 FlyBaseID:FBgn0037712 Length:831 Species:Drosophila melanogaster
Sequence 2:NP_956876.1 Gene:trip13 / 393554 ZFINID:ZDB-GENE-040426-1488 Length:424 Species:Danio rerio


Alignment Length:233 Identity:43/233 - (18%)
Similarity:86/233 - (36%) Gaps:73/233 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   568 RSILLAGPKGSGKKALLHAICTEVGAVLFD---------LTPANIVGKYPGKSGLIMLIHLVLKV 623
            |.:||.||.|:||.:|...:..::...|.|         :...::..|:..:||. ::..:..|:
Zfish   165 RVVLLHGPPGTGKTSLCKGLAQKLSIRLSDRYAHSQFVEINSHSLFSKWFSESGK-LVTKMFQKI 228

  Fly   624 SRLL--QPAVIFMGDAERPFMKKIPK-----------TDRTDPKRLKKDLPKLIKNIAPEDRVVF 675
            ..|:  :.|::|:      .:.::..           |:.:|..|:...:...:..|.....||.
Zfish   229 QELIDDKDALVFV------LIDEVESLTAARSAAQAGTEPSDAIRVVNSVLTQLDQIKRHPNVVI 287

  Fly   676 IGTSNLPWEADQKLLQSVYNRFIYIPRPDYGAMSHAWKTLLHDYSG-----GISNLDTSAMAKIS 735
            :.|||:..:.|          ..::.|.|           :..|.|     .|.|:..|:     
Zfish   288 LTTSNVTEKID----------LAFVDRAD-----------IKQYIGPPSAKAIFNIYLSS----- 326

  Fly   736 DGYTIGSIDACLKEVMTCKRKLQLRTQPLTNAELINVL 773
                       |:|:|  ||::....|.|.:.|.:..:
Zfish   327 -----------LEELM--KRQIIYPRQQLVSLEELETM 351

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG16789NP_649910.3 DUF5401 <131..>307 CDD:375164
SpoVK 443..773 CDD:440232 43/231 (19%)
P-loop containing Nucleoside Triphosphate Hydrolases 542..700 CDD:476819 28/153 (18%)
trip13NP_956876.1 RecA-like_Pch2-like 113..311 CDD:410916 30/173 (17%)
Blue background indicates that the domain is not in the aligned region.

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