DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Vps45 and car

DIOPT Version :9

Sequence 1:NP_649909.1 Gene:Vps45 / 41153 FlyBaseID:FBgn0261049 Length:574 Species:Drosophila melanogaster
Sequence 2:NP_001259707.1 Gene:car / 32947 FlyBaseID:FBgn0000257 Length:639 Species:Drosophila melanogaster


Alignment Length:657 Identity:136/657 - (20%)
Similarity:251/657 - (38%) Gaps:163/657 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 IKLYIEKMCSE------SGPGMKIILLDKETTSIISMAFSQSDMLQREVYLFERLDSGRSNERLK 65
            ::|..|..|.|      ...|.|:|:||:.....:       |::.|.....:|      ..||.
  Fly    14 LQLLQEAACRELLQQLDRIEGSKVIVLDETMIGPL-------DLVTRPKLFADR------GIRLL 65

  Fly    66 YLK-----------CIVFIRPTKQNIQLLANELRNPKYSA----YYIYFSNIIPRTDIKYLAECD 115
            .||           .:..:||....::.||..::....:|    |:|.|:   ||.....:::.:
  Fly    66 ALKPELHLPREVANVVYVMRPRVALMEQLAAHVKAGGRAAAGRQYHILFA---PRRSCLCVSQLE 127

  Fly   116 ES---ESVREVKELYADYLCVNPNLFSLGIPNCMANLNWLPDALNRSMQGITAVLLSLKLNPVIR 177
            .|   .|...::||..:||.::.:|.|:.:||...::         |:.|.|:.|          
  Fly   128 VSGVLGSFGNIEELAWNYLPLDVDLVSMEMPNAFRDV---------SVDGDTSSL---------- 173

  Fly   178 YRAGSQAAQLLAKLIYEQITK---------------------ESSLFDFRSNMDGAAPPLLLVLD 221
            |:|.....||  :.:|.:|.|                     |.:|:    |.|......|::||
  Fly   174 YQAAVGLVQL--QRLYGRIPKIYGKGEFAHRVWEHAKQLGRDERTLY----NGDKGVVDQLILLD 232

  Fly   222 RRDDPVTPLLHQWTYQAMVHELLHIKNNRLDLSNCPNVPKD-----------------------F 263
            |..|.::||..|.||:.::.|...|:.|:|.|. ..|.|.|                       .
  Fly   233 RSIDLLSPLATQLTYEGLIDEFYGIRQNKLTLP-AENFPSDGALPGGGGSGPRVEESQSLLGDTE 296

  Fly   264 KELVLSGDQDDFYGNNMYANYGEIGSTIKQLMEEFQRKANDHKKVESIADMKNFIES-YPQFKKM 327
            |:.:|....:..|......::.|:...:.:...|...:.:...:.:|:.::|:|:|: .||....
  Fly   297 KKTILLHSGEQLYAELRNKHFNEVTKLLARKAREIHVQMHATSQDKSVQEIKSFVENLLPQLMAQ 361

  Fly   328 SGTVQKHLCVIGELSALSNKRNLFEVSELEQEIACKAEHSAQLQRIKKLIADERVSIDDALKLVA 392
            .....:|..:.|.|....|.....:....|||....|:.......|:.|||. ||.::..|:|:.
  Fly   362 KKATSEHTAIAGLLHEQVNAVRFADDLAAEQEFMVCADIDKPSAYIEDLIAC-RVELNRVLRLIC 425

  Fly   393 LYALRYERHANCDTSG----LL-----QIIKTRGGRAAIVPSLIEYAG-THVR-QGDLFNMVRIT 446
            :     :.||   .||    ||     :::...|....:..|.:|.:| .|:: :...::::|.|
  Fly   426 M-----QCHA---ASGFKEKLLNHYKRELVHVYGLEVLLTISNLEKSGLLHLQTESRAYSVLRKT 482

  Fly   447 DAVKLTRNLIKGLKGVENVFTQHTPLLKETLEDVFK--GREL---------DPLFPAINSELV-- 498
            ..:.:..|:....|.:..|.:.:.||....:|...|  |.:.         .|.|....::||  
  Fly   483 LHLTVDDNVEIEPKDISYVHSFYAPLTARIVEHSLKPLGWQTLKSQINNLPGPTFEDFQAQLVGI 547

  Fly   499 ------------PFRRPPQEVVVFIIGGATYEEA-----LAVHQLNNAGYKVILGGTTIHNSQSF 546
                        .....|:.|:|..:||.|:.|.     ||..:.||..:  ::..|.:.|..||
  Fly   548 GGRHTVTTVSEGSLLNVPRVVLVCFVGGCTFAEIAALRFLAAQEDNNVEF--LIATTKVVNKHSF 610

  Fly   547 IQEVVAA 553
            :..::::
  Fly   611 LDSLMSS 617

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vps45NP_649909.1 Sec1 23..543 CDD:279352 128/623 (21%)
carNP_001259707.1 Sec1 36..606 CDD:279352 128/622 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45464245
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5158
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11679
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.840

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