DRSC/TRiP Functional Genomics Resources

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Protein Alignment MBD-like and MBD02

DIOPT Version :9

Sequence 1:NP_001262421.1 Gene:MBD-like / 41151 FlyBaseID:FBgn0027950 Length:340 Species:Drosophila melanogaster
Sequence 2:NP_001190421.1 Gene:MBD02 / 833487 AraportID:AT5G35330 Length:272 Species:Arabidopsis thaliana


Alignment Length:51 Identity:15/51 - (29%)
Similarity:19/51 - (37%) Gaps:21/51 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 PKGWQRDEVRKSGSSANNNASSNNNSSATASSNNNNNKVDVFYYSSPTGKR 70
            |.|||| .:|..|......|                   || ||.:|:||:
plant   129 PAGWQR-LLRIRGEGGTRFA-------------------DV-YYVAPSGKK 158

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MBD-likeNP_001262421.1 MBD 13..98 CDD:279737 15/51 (29%)
MBDa 172..241 CDD:293172
MBD_C 246..338 CDD:290755
MBD02NP_001190421.1 zf-CW 59..110 CDD:400052
MeCP2_MBD 122..201 CDD:238690 15/51 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4161
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1743
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.900

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