DRSC/TRiP Functional Genomics Resources

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Protein Alignment MBD-like and MBD3

DIOPT Version :10

Sequence 1:NP_001262421.1 Gene:MBD-like / 41151 FlyBaseID:FBgn0027950 Length:340 Species:Drosophila melanogaster
Sequence 2:NP_567177.1 Gene:MBD3 / 828069 AraportID:AT4G00416 Length:163 Species:Arabidopsis thaliana


Alignment Length:140 Identity:24/140 - (17%)
Similarity:47/140 - (33%) Gaps:45/140 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   224 REKPKQLFWEKRLERLRACHDSGEEL------------DDISLPKT---------IRT------- 260
            |.|..:.|:|     .:.|.:.|:.:            |:.|:|||         :||       
plant    35 RSKTLEKFFE-----CKRCEEPGDMVMNFDSLTMRWFQDEHSIPKTPQGLKRVLVVRTNCVKVDV 94

  Fly   261 ----VGPNVNEQTVLQSVATALHMLNAGVHGQSSTKADLTKNAMAFMNPEQPLMHAVIISEDDIR 321
                :.|.......::.|||.:.        ......|:|...::|..|::..:....:......
plant    95 YYESLAPRRKRFKSIKEVATFIE--------DKEEFKDMTLEEVSFAAPKRLKLKKKPVDSHSSS 151

  Fly   322 KQEDRVGVAR 331
            :..:..||:|
plant   152 RNTEEDGVSR 161

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MBD-likeNP_001262421.1 MBD 9..101 CDD:396147
MBDa 171..241 CDD:465179 4/16 (25%)
MBD_C 245..338 CDD:464072 19/119 (16%)
MBD3NP_567177.1 MeCP2_MBD 70..134 CDD:238690 13/71 (18%)
Blue background indicates that the domain is not in the aligned region.

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