DRSC/TRiP Functional Genomics Resources

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Protein Alignment MBD-like and MBD5

DIOPT Version :9

Sequence 1:NP_001262421.1 Gene:MBD-like / 41151 FlyBaseID:FBgn0027950 Length:340 Species:Drosophila melanogaster
Sequence 2:NP_190242.1 Gene:MBD5 / 823811 AraportID:AT3G46580 Length:182 Species:Arabidopsis thaliana


Alignment Length:78 Identity:22/78 - (28%)
Similarity:31/78 - (39%) Gaps:27/78 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 NPSVTIE---RKRV---DCSVLPKGWQRD-EVRKSGSSANNNASSNNNSSATASSNNNNNKVDVF 61
            ||:..::   |||.   |.:.||..|:.: .||.||:.|..                    ||.|
plant    14 NPATPVDSKSRKRATPGDDNWLPPDWRTEIRVRTSGTKAGT--------------------VDKF 58

  Fly    62 YYSSPTGKRAEGK 74
            ||...||::...|
plant    59 YYEPITGRKFRSK 71

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MBD-likeNP_001262421.1 MBD 13..98 CDD:279737 18/66 (27%)
MBDa 172..241 CDD:293172
MBD_C 246..338 CDD:290755
MBD5NP_190242.1 MeCP2_MBD 29..110 CDD:238690 17/63 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4161
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001638
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.900

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