DRSC/TRiP Functional Genomics Resources

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Protein Alignment MBD-like and mbd1

DIOPT Version :9

Sequence 1:NP_001262421.1 Gene:MBD-like / 41151 FlyBaseID:FBgn0027950 Length:340 Species:Drosophila melanogaster
Sequence 2:XP_031746679.1 Gene:mbd1 / 493208 XenbaseID:XB-GENE-920305 Length:632 Species:Xenopus tropicalis


Alignment Length:82 Identity:22/82 - (26%)
Similarity:31/82 - (37%) Gaps:34/82 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 VLPKGWQRD-EVRKSGSSANNNASSNNNSSATASSNNNNNKVDVFYYSSPTGKR----------- 70
            :|..||:|. .|||||.|..:..:                     ||.||||::           
 Frog    10 LLGPGWKRRIAVRKSGVSCGHTDT---------------------YYKSPTGEKIRSRIELAKYF 53

  Fly    71 -AEGKPQDIAIPDFQPG 86
             |.|...|:.:.||:.|
 Frog    54 NALGSSVDLTLFDFRNG 70

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MBD-likeNP_001262421.1 MBD 13..98 CDD:279737 22/82 (27%)
MBDa 172..241 CDD:293172
MBD_C 246..338 CDD:290755
mbd1XP_031746679.1 MeCP2_MBD 5..68 CDD:238690 20/78 (26%)
zf-CXXC 163..209 CDD:366873
zf-CXXC 211..257 CDD:366873
zf-CXXC 304..351 CDD:366873
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 50 1.000 Domainoid score I11468
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1431783at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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