DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment AP-1mu and APM2

DIOPT Version :9

Sequence 1:NP_649906.1 Gene:AP-1mu / 41150 FlyBaseID:FBgn0024833 Length:426 Species:Drosophila melanogaster
Sequence 2:NP_011844.1 Gene:APM2 / 856367 SGDID:S000001011 Length:605 Species:Saccharomyces cerevisiae


Alignment Length:609 Identity:147/609 - (24%)
Similarity:235/609 - (38%) Gaps:210/609 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SSAIFVLDVKGKVLISRNYRG-DNIDMAVIDKFMPLLMEREEEGLITPILQTAETTFAYIKTNNL 66
            ||::|:||...:.|:|:|.|. .|:. :|:..|.....:..     .|||...:..|.::|.:.|
Yeast     2 SSSLFILDENLEPLVSKNIRALPNLS-SVLSSFKQCYHDGS-----PPILSQNDWFFIHLKRDFL 60

  Fly    67 YIVST--TPRNKNVNIALVFVFLHKIAQVFVEYF--KELEEESIRDNFVIIYELLDELLDFGYPQ 127
            :.||.  |....|:::..:..||.:...:..:||  :.|.:..|.||.:::.||:||.:|||..|
Yeast    61 HFVSVIHTTDKPNIDLMTILAFLEQFYHLLQKYFEIEVLTKNVILDNILLVLELIDECIDFGIVQ 125

  Fly   128 TTDSKILQEYI------------------------------------------------------ 138
            .||..|:::||                                                      
Yeast   126 VTDPSIIKDYIRVKVNVPRVTVDNEEWSPGEESSSSSGSDSDSEYSNTNKRKDKKKKRKKKKGTK 190

  Fly   139 -----------------------------------------------TQEGHKLELQPRIPVAVT 156
                                                           ..:|:.|.:...|...:.
Yeast   191 GKSVGKSKLKSIMVNNKENRGINVVETVKETLRNKNDTGKEAANDELPNDGNDLYINGDIAKTII 255

  Fly   157 NAVSWRSEGIKYRKNEVFLDVIESVNLLANANGNVLRSEIV-GAIKMRVYLSGMPELRLGLNDKV 220
            ..:|||::||.|.|||.||||||.|..|.:....|:|..:: |.|..|.||||||:|::.:| |:
Yeast   256 MPISWRTKGIHYAKNEFFLDVIERVQYLMDFEKGVIRKNLIHGEIVCRCYLSGMPKLKISIN-KI 319

  Fly   221 LFESTGRGKSKSVE-LEDVKFHQCVRL---SRFEND-----------------RTISFIPPDGEF 264
            |        ::..: :.:..|||||.|   :..|.|                 |.|.||||||||
Yeast   320 L--------NRDPQFMSNSSFHQCVSLDSINTIEKDEEKNSDDDAGLQAATDAREIEFIPPDGEF 376

  Fly   265 ELMSYRLNTHVK--PLIWIE--SVIERHAHSRVEYMIKAKSQFKRRSTANNVEIVIPVPADADSP 325
            .|..|.|..|||  |::.::  .:..:....:::.:.|.::.||..::.:.:.:.||:.......
Yeast   377 VLCQYELKRHVKDAPMVRLKDFEIKPKLKKFKIQIVTKIQTNFKPTNSTSKLNVRIPLTKVFQEY 441

  Fly   326 K--------FKTTIGSCKYAPEQNAIIWTIKSFPGGKEY-------------------LMRAHFG 363
            |        ||..||...:....:.::|.|::..|.:|:                   .|.|.|.
Yeast   442 KIDLSKQIRFKANIGKVVFNLSDDFLLWEIQTMKGHREHSTNKSSQYNSDEDDPNTCASMVAEFP 506

  Fly   364 LPSVESED------NTEGKPP-----------------------------IQVRFEIPYFTTSGI 393
            |.:.|..|      .|...||                             :.:.|||||.|.||:
Yeast   507 LFNQEEYDRLQEEMKTSMNPPPLRTGPRLEELYRQVHDQQTSHVTPRDKLVNIDFEIPYCTCSGL 571

  Fly   394 QVRYLKIIE-KSGYQALPWVRYIT 416
            :|.|||:.| :..||:.|||||.|
Yeast   572 KVEYLKVEEPQLQYQSFPWVRYKT 595

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AP-1muNP_649906.1 AP1_Mu_N 4..145 CDD:341439 43/246 (17%)
AP-1_Mu1A_Cterm 155..425 CDD:271166 101/351 (29%)
APM2NP_011844.1 AP_Mu_N 3..138 CDD:341432 42/140 (30%)
AP-1_Mu1_Cterm 256..603 CDD:271158 101/349 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0937
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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