DRSC/TRiP Functional Genomics Resources

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Protein Alignment AP-1mu and dpy-23

DIOPT Version :9

Sequence 1:NP_649906.1 Gene:AP-1mu / 41150 FlyBaseID:FBgn0024833 Length:426 Species:Drosophila melanogaster
Sequence 2:NP_741770.1 Gene:dpy-23 / 180713 WormBaseID:WBGene00001082 Length:441 Species:Caenorhabditis elegans


Alignment Length:445 Identity:180/445 - (40%)
Similarity:264/445 - (59%) Gaps:35/445 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 IFVLDVKGKVLISRNYRGDNIDMAVIDKFMPLLMEREEEGLITPILQTAETTFAYIKTNNLYIVS 70
            :||.:.||:|||||.|| |::....:|.|...::...:: :.:|:...|.|:|.::|..|::|.:
 Worm     5 LFVYNHKGEVLISRIYR-DDVTRNAVDAFRVNVIHARQQ-VRSPVTNMARTSFFHVKRGNVWICA 67

  Fly    71 TTPRNKNVNIALVFVFLHKIAQVFVEYFKELEEESIRDNFVIIYELLDELLDFGYPQTTDSKILQ 135
            .|  .:|||.|:||.||.:.|.....||.:|.||::::|||:|||||||:|||||||.||..:|:
 Worm    68 VT--RQNVNAAMVFEFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILDFGYPQNTDPGVLK 130

  Fly   136 EYITQEGHKL---------ELQPRIPVAVTNAVSWRSEGIKYRKNEVFLDVIESVNLLANANGNV 191
            .:|||:|.:.         |.|.:|...||..:.||.||||||:||:||||||.||||.|..|.|
 Worm   131 TFITQQGVRTADAPVPVTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVIEYVNLLMNQQGQV 195

  Fly   192 LRSEIVGAIKMRVYLSGMPELRLGLNDKVLFESTGRGKSK------------SVELEDVKFHQCV 244
            |.:.:.|.:.|:.|||||||.:.|:|||:..|    ||||            :|.::|.:|||||
 Worm   196 LSAHVAGKVAMKSYLSGMPECKFGINDKITIE----GKSKPGSDDPNKASRAAVAIDDCQFHQCV 256

  Fly   245 RLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIERHAHSRVEYMIKAKSQFKRRSTA 309
            :|::||.:..|||||||||:|||.||....::....:..::...:.:::|..:..||.||....|
 Worm   257 KLTKFETEHAISFIPPDGEYELMRYRTTKDIQLPFRVIPLVREVSRNKMEVKVVVKSNFKPSLLA 321

  Fly   310 NNVEIVIPVPADADSPKFKTTIGSCKYAPEQNAIIWTIKSFPGGKEYLMRAHFGLPSVES-EDNT 373
            ..:|:.||.|.:....:.....|..||...:|||:|.||...|.||..:.|...|.|..: |...
 Worm   322 QKLEVRIPTPPNTSGVQLICMKGKAKYKAGENAIVWKIKRMAGMKESQISAEIDLLSTGNVEKKK 386

  Fly   374 EGKPPIQVRFEIPYFTTSGIQVRYLKIIEK----SGYQALPWVRYITQNGDYQLR 424
            ..:||:.:.||:| |..||::|||||:.|.    |.:..:.|||||.::|.|:.|
 Worm   387 WNRPPVSMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 440

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AP-1muNP_649906.1 AP1_Mu_N 4..145 CDD:341439 60/138 (43%)
AP-1_Mu1A_Cterm 155..425 CDD:271166 117/287 (41%)
dpy-23NP_741770.1 Clat_adaptor_s 1..126 CDD:261170 54/124 (44%)
AP-2_Mu2_Cterm 172..440 CDD:271159 108/272 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D725236at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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