DRSC/TRiP Functional Genomics Resources

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Protein Alignment RnpS1 and RBP45B

DIOPT Version :10

Sequence 1:NP_649903.1 Gene:RnpS1 / 41147 FlyBaseID:FBgn0037707 Length:374 Species:Drosophila melanogaster
Sequence 2:NP_172630.1 Gene:RBP45B / 837708 AraportID:AT1G11650 Length:405 Species:Arabidopsis thaliana


Alignment Length:214 Identity:48/214 - (22%)
Similarity:81/214 - (37%) Gaps:54/214 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   165 RAAADSNNVKRERSRSASRSRSPRRRGRGSVERTPPPKRRERSRSR---TRSPSPKQVRIHVGRL 226
            ||..:.|.|        ..|..|.|.|..:.::....:|.....|.   |....|....:.||.|
plant   212 RAMTEMNGV--------PCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGL 268

  Fly   227 TRNVTKDHVFEIFSSFGDVKNVEFPVDRFHPNFGRGVAFVEYATPEDCESAMKHMDGGQIDGQEI 291
            ..:||.||:..:||.:|::.:|:.|.       |:...||:::.....|.|::.::|.|:.|..:
plant   269 DASVTDDHLKNVFSQYGEIVHVKIPA-------GKRCGFVQFSEKSCAEEALRMLNGVQLGGTTV 326

  Fly   292 TVSPVVLVKQRPPMRRPSPPMRRPQNNRWRSPPQF--------------------NRFNNRGGGG 336
            .:|                ..|.|.|.:...|.||                    |.:.....||
plant   327 RLS----------------WGRSPSNKQSGDPSQFYYGGYGQGQEQYGYTMPQDPNAYYGGYSGG 375

  Fly   337 GGGGGRRQSPMRNRRSPRR 355
            |..||.:|:|...::.|::
plant   376 GYSGGYQQTPQAGQQPPQQ 394

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RnpS1NP_649903.1 RRM_RNPS1 221..294 CDD:409800 20/72 (28%)
RBP45BNP_172630.1 RRM1_SECp43_like 63..142 CDD:409780
RRM2_SECp43_like 154..233 CDD:409781 8/28 (29%)
RRM_SF 260..331 CDD:473069 21/93 (23%)
Blue background indicates that the domain is not in the aligned region.

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