Protein Alignment RnpS1 and AT5G65260

DIOPT Version :10

• Sequence 1: NP_649903.1
• Gene: RnpS1 / 41147
• FlyBaseID: FBgn0037707
• Length: 374
• Species: Drosophila melanogaster
• Sequence 2: NP_201329.1
• Gene: AT5G65260 / 836651
• AraportID: AT5G65260
• Length: 220
• Species: Arabidopsis thaliana
• Alignment Length: 231
• Identity: 53/231 - (22%)
• Similarity: 92/231 - (39%)
• Gaps: 59/231 - (25%)

  Fly   144 ERDRDRRSRSRDRARRAGSNDRAAADSNNVK-----RERSRSASRSRSPRRRGRGSVERTPPPKR 203
            |.|.|..:.:.|.       |.||||.:.||     ::|.:......:..|..:..||
plant    18 EMDGDMEALNPDL-------DMAAADDDAVKELDEMKKRLKEMEDEAAALREMQAKVE------- 68

  Fly   204 RERSRSRTRSPSPKQV--------RIHVGRLTRNVTKDHVFEIFSSFGDVKNVEFPVDRF-HPNF 259
            :|.......|.:..|.        .:.||.:....|.:.|.:.|.:.|.|..|....|:| .|
plant    69 KEMGAQDPASIAANQAGKEEVDARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQP-- 131

  Fly   260 GRGVAFVEYATPEDCESAMKHMDGGQIDGQEITVSPVVLVKQRPPM--------RRPSPPM---- 312
             :|.|:||:...|..:.|:: ::..::.|:::.|     :::|..:        ||.:|.|
plant   132 -KGFAYVEFVEVEAVQEALQ-LNESELHGRQLKV-----LQKRTNVPGLKQFRGRRFNPYMGYRF 189

  Fly   313 RRPQNNRWRSPPQFNRFNNRGGGGGGGGGRRQSPMR 348
            |||    :.||..::.:      |.|...|.:.|||
plant   190 RRP----FMSPYMYSPY------GYGKAPRFRRPMR 215

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RnpS1	NP_649903.1	RRM_RNPS1	221..294	CDD:409800	18/73 (25%)
AT5G65260	NP_201329.1	PABP-1234	<61..>219	CDD:130689	41/181 (23%)
		RRM_II_PABPs	93..164	CDD:409747	19/79 (24%)