DRSC/TRiP Functional Genomics Resources

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Protein Alignment RnpS1 and RBP47B

DIOPT Version :10

Sequence 1:NP_649903.1 Gene:RnpS1 / 41147 FlyBaseID:FBgn0037707 Length:374 Species:Drosophila melanogaster
Sequence 2:NP_188544.1 Gene:RBP47B / 821447 AraportID:AT3G19130 Length:435 Species:Arabidopsis thaliana


Alignment Length:209 Identity:52/209 - (24%)
Similarity:81/209 - (38%) Gaps:53/209 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   146 DRDRRSRS---------RDRARRAG--SNDRAAADSNNVKRERSRSASRSRSPRRRGRGSVERTP 199
            |.:.|||:         .:|..|.|  :..||.|:......:....|....|....|.|      
plant   253 DENERSRALTEMNGAYCSNRQMRVGIATPKRAIANQQQHSSQAVILAGGHGSNGSMGYG------ 311

  Fly   200 PPKRRERSRSRTRSPSPKQVRIHVGRLTRNVTKDHVFEIFSSFGDVKNVEFPVDRFHPNFGRGVA 264
                   |:|...|.:   ..|.||.:..:|..:.:.:.||.||:|.:|:.||       |:|..
plant   312 -------SQSDGESTN---ATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPV-------GKGCG 359

  Fly   265 FVEYATPEDCESAMKHMDGGQIDGQEITVSPVVLVKQRPPMRRPSPPMRRPQNNRWR--SPPQFN 327
            ||::|..:..|.|::.::|..|....:.:|                 ..|..|.:||  |..|:|
plant   360 FVQFADRKSAEDAIESLNGTVIGKNTVRLS-----------------WGRSPNKQWRGDSGQQWN 407

  Fly   328 RFNNRGGGGGGGGG 341
            ...:||.|...|||
plant   408 GGYSRGHGYNNGGG 421

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RnpS1NP_649903.1 RRM_RNPS1 221..294 CDD:409800 21/72 (29%)
RBP47BNP_188544.1 RRM1_SECp43_like 109..189 CDD:409780
RRM2_SECp43_like 201..280 CDD:409781 7/26 (27%)
RRM_SF 320..391 CDD:473069 22/97 (23%)
Blue background indicates that the domain is not in the aligned region.

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