Protein Alignment RnpS1 and AT2G43370

DIOPT Version :10

• Sequence 1: NP_649903.1
• Gene: RnpS1 / 41147
• FlyBaseID: FBgn0037707
• Length: 374
• Species: Drosophila melanogaster
• Sequence 2: NP_850395.1
• Gene: AT2G43370 / 818938
• AraportID: AT2G43370
• Length: 333
• Species: Arabidopsis thaliana
• Alignment Length: 185
• Identity: 47/185 - (25%)
• Similarity: 69/185 - (37%)
• Gaps: 66/185 - (35%)

  Fly   221 IHVGRLTRNVTKDHVFEIFSSFGDVKNVEFPVDRFHPNFGRGVAFVEYATPEDCESAMKHMDGGQ 285
            :.||||:.:.|:|.:.|:.|.:|.:||:.. |........||..||||.|.::...|.:......
plant    66 LFVGRLSHHTTEDTLREVMSKYGRIKNLRL-VRHIVTGASRGYGFVEYETEKEMLRAYEDAHHSL 129

  Fly   286 IDGQEITVSPVVLVKQRPPMRRPSPPMRRPQNNRWRSPPQFNRFNNRGGG-----GGGGGGRRQS 345
            |||:||.|                               .:||.....|.     |||.|||::|
plant   130 IDGREIIV-------------------------------DYNRQQLMPGWIPRRLGGGLGGRKES 163

  Fly   346 PM-----RNR--RSPRR----------------------RSRSPIRRRRRSNSSD 371
            ..     |:|  |:|.|                      |::.|...||:.:.||
plant   164 GQLRFGGRDRPFRAPLRPIPHEDLKKLGIQLPPEGRYMSRTQIPSPPRRKGSVSD 218

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RnpS1	NP_649903.1	RRM_RNPS1	221..294	CDD:409800	25/72 (35%)
AT2G43370	NP_850395.1	RRM_snRNP35	60..150	CDD:409683	29/115 (25%)
		U2AF_lg	218..>324	CDD:273727	1/1 (100%)