DRSC/TRiP Functional Genomics Resources

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Protein Alignment RnpS1 and AT2G37220

DIOPT Version :10

Sequence 1:NP_649903.1 Gene:RnpS1 / 41147 FlyBaseID:FBgn0037707 Length:374 Species:Drosophila melanogaster
Sequence 2:NP_181259.1 Gene:AT2G37220 / 818299 AraportID:AT2G37220 Length:289 Species:Arabidopsis thaliana


Alignment Length:176 Identity:46/176 - (26%)
Similarity:75/176 - (42%) Gaps:42/176 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   181 ASRSRSPRRRGRGSVERT-------------PPPKRRERSRSRTRSPSPKQVRIHVGRLTRNVTK 232
            |::..||..|...:|..|             .|||.:..|         ..:::.||.|..||..
plant    49 AAKWNSPASRFARNVAITSEFEVEEDGFADVAPPKEQSFS---------ADLKLFVGNLPFNVDS 104

  Fly   233 DHVFEIFSSFGDVKNVEFPVDRFHPNFGRGVAFVEYATPEDCESAMKHMDGGQIDGQEITVS--P 295
            ..:.::|.|.|:|:.||...|:. ....||..||..::..:.|:|.:..:|.::||:.:.|:  |
plant   105 AQLAQLFESAGNVEMVEVIYDKI-TGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGP 168

  Fly   296 VVLVKQRPPMRRPSPPMRRPQNNRWRSPPQFNRFNNRGGGGGGGGG 341
                   ||.:|.....|.|:::          |.:.|.|.|||||
plant   169 -------PPPKREDGFSRGPRSS----------FGSSGSGYGGGGG 197

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RnpS1NP_649903.1 RRM_RNPS1 221..294 CDD:409800 21/72 (29%)
AT2G37220NP_181259.1 RRM_SF 92..170 CDD:473069 23/85 (27%)
RRM 204..287 CDD:440488
Blue background indicates that the domain is not in the aligned region.

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