DRSC/TRiP Functional Genomics Resources

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Protein Alignment RnpS1 and AT2G27330

DIOPT Version :10

Sequence 1:NP_649903.1 Gene:RnpS1 / 41147 FlyBaseID:FBgn0037707 Length:374 Species:Drosophila melanogaster
Sequence 2:NP_565646.2 Gene:AT2G27330 / 817276 AraportID:AT2G27330 Length:116 Species:Arabidopsis thaliana


Alignment Length:115 Identity:28/115 - (24%)
Similarity:55/115 - (47%) Gaps:14/115 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   197 RTPPPKRRERSRSRTRSPSPKQVRIHVGRLTRNVTKDHVFEIFSSFGDVKNVEFPVD--RFHPNF 259
            |:..|....||.|.|         :.|..::.:.|::.:.:.||.:|.|..|:..:|  |..|  
plant     8 RSFTPLLFSRSFSST---------LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRP-- 61

  Fly   260 GRGVAFVEYATPEDCESAMKHMDGGQIDGQEITVSPVVLVKQRPPMRRPS 309
             :|.|:|.:::.|:.|.|:..::...:||:.:.:......|..||..:|:
plant    62 -KGFAYVTFSSKEEAEKALLELNAQLVDGRVVILDTTKAAKHNPPDTKPN 110

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RnpS1NP_649903.1 RRM_RNPS1 221..294 CDD:409800 18/74 (24%)
AT2G27330NP_565646.2 RRM_SF 23..99 CDD:473069 18/78 (23%)

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