DRSC/TRiP Functional Genomics Resources

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Protein Alignment RnpS1 and PABPN1

DIOPT Version :10

Sequence 1:NP_649903.1 Gene:RnpS1 / 41147 FlyBaseID:FBgn0037707 Length:374 Species:Drosophila melanogaster
Sequence 2:NP_004634.1 Gene:PABPN1 / 8106 HGNCID:8565 Length:306 Species:Homo sapiens


Alignment Length:301 Identity:64/301 - (21%)
Similarity:111/301 - (36%) Gaps:59/301 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    79 SSSSSSSSSSDSDRSEKNRRR-----GGGAAGKDKDKDKPSARSRSRSRTRSPRRVSKSPRPGSK 138
            :::::::.::....|...|||     .||.||:..........:...|....|..:...|.|..:
Human     5 AAAAAAAGAAGGRGSGPGRRRHLVPGAGGEAGEGAPGGAGDYGNGLESEELEPEELLLEPEPEPE 69

  Fly   139 ARKEPERDR-----------DRRSRSRDRARRAG-----SNDRAAADS--NNVK---RERSRSAS 182
            ..:||.|.|           .....|::.....|     ..|.|..|.  ..:|   ||....|.
Human    70 PEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDPELEAIKARVREMEEEAE 134

  Fly   183 RSRSPRRRGRGSVERTPPPKR--------RERSRSRTRSPSPKQVRIHVGRLTRNVTKDHVFEIF 239
            :.:..:......:..:|||..        .|:..:..||       |:||.:....|.:.:...|
Human   135 KLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARS-------IYVGNVDYGATAEELEAHF 192

  Fly   240 SSFGDVKNVEFPVDRF--HPNFGRGVAFVEYATPEDCESAMKHMDGGQIDGQEITVSPVVLVKQ- 301
            ...|.|..|....|:|  ||   :|.|::|::..|...:::. :|.....|::|.|.|    |: 
Human   193 HGCGSVNRVTILCDKFSGHP---KGFAYIEFSDKESVRTSLA-LDESLFRGRQIKVIP----KRT 249

  Fly   302 -RPPMR---RPSPPMR-RPQNNRWRSPPQ--FNRFNNRGGG 335
             ||.:.   |..|..| |.:...:.|...  ::.||:|..|
Human   250 NRPGISTTDRGFPRARYRARTTNYNSSRSRFYSGFNSRPRG 290

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RnpS1NP_649903.1 RRM_RNPS1 221..294 CDD:409800 19/74 (26%)
PABPN1NP_004634.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..115 20/109 (18%)
Interaction with SKIP. /evidence=ECO:0000269|PubMed:11371506 2..145 25/139 (18%)
GCG-encoded polyalanine repeat 2..7 0/1 (0%)
Stimulates PAPOLA. /evidence=ECO:0000250 119..147 4/27 (15%)
Necessary for homooligomerization 155..306 36/151 (24%)
RRM_II_PABPN1 173..248 CDD:409966 22/89 (25%)
Interaction with PAPOLA. /evidence=ECO:0000250 286..306 2/5 (40%)

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