DRSC/TRiP Functional Genomics Resources

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Protein Alignment RnpS1 and CG34334

DIOPT Version :10

Sequence 1:NP_649903.1 Gene:RnpS1 / 41147 FlyBaseID:FBgn0037707 Length:374 Species:Drosophila melanogaster
Sequence 2:NP_001097042.1 Gene:CG34334 / 5740122 FlyBaseID:FBgn0263829 Length:708 Species:Drosophila melanogaster


Alignment Length:384 Identity:118/384 - (30%)
Similarity:165/384 - (42%) Gaps:80/384 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MARAQSLAGEGEKEKDNKEKVAKEKDGKATSGSSRRDRERKRRGSASSSSDSRSSTSDSSS---- 61
            ||...|..|.......||        |.:::|.|.:.......||.:.....::|.:.:||    
  Fly   342 MAETNSSGGASISSTKNK--------GDSSTGQSSKTVVTNNAGSKAGYQAPKTSVASTSSKAVV 398

  Fly    62 ---SRSSSGSSRSSSSSSSDS---SSSSSSSSSDSDRS-EKNRRRGGGAAGKDKDKDKPSARSRS 119
               :.:|||....:|||||.:   ||:..|::.|.|:| ::||....|..||....:.|..|..|
  Fly   399 RSNASASSGHGNHTSSSSSFTQLHSSARPSTAKDHDKSPQQNRSGSSGPKGKSSKINDPPRRGSS 463

  Fly   120 RSRTRSPRRVSKSPRPGSKARKEPERDRDRRSRSRDRARRAGSNDRAAADSNNVKRERSRSASRS 184
            .|....|.|..:|.:..:......:.:..|.....:.|..:|...||..:.|.|.....:.|.:.
  Fly   464 PSAGAEPTRQKQSVQNQNGRNCSSQWNHRRGEGDGEGAEASGRGYRAVGEVNKVAYRNGKDAFKF 528

  Fly   185 RSPRRRGRGSVERTPPPKRRERSRSRTRSPSPKQVRIHVGRLTRNVTKDHVFEIFSSFGDVKNVE 249
            |.|.|                            .||:|:..|||.|||:|:.|||..||.:..|:
  Fly   529 RQPVR----------------------------NVRLHIKGLTRQVTKEHITEIFGHFGALTAVD 565

  Fly   250 FPVDRFHPNFGRGVAFVEYATPEDCESAMKHMDGGQIDGQEITVSPVVLVKQRPPMRRPSPPMRR 314
            ||:|||....|||.|||||:.||||.||:|||:||||||:.|.||..    |...::.|      
  Fly   566 FPMDRFQGRQGRGYAFVEYSRPEDCASAIKHMNGGQIDGKLIRVSAF----QESMLKAP------ 620

  Fly   315 PQNNRWRSPPQFNRFNNRGGGGGGGGGRRQSPMRNRRSPRRRSRSPIRRRRRSNSSDSS 373
                 ||   |:               ||.||:..|:|.|..|||....|.||.|..:|
  Fly   621 -----WR---QY---------------RRYSPVNRRQSQRTLSRSGSSSRSRSPSRSAS 656

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RnpS1NP_649903.1 RRM_RNPS1 221..294 CDD:409800 43/72 (60%)
CG34334NP_001097042.1 Herpes_BLLF1 <312..504 CDD:282904 42/169 (25%)
RRM_RNPS1 537..610 CDD:409800 43/72 (60%)

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