DRSC/TRiP Functional Genomics Resources

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Protein Alignment RnpS1 and eif3g

DIOPT Version :10

Sequence 1:NP_649903.1 Gene:RnpS1 / 41147 FlyBaseID:FBgn0037707 Length:374 Species:Drosophila melanogaster
Sequence 2:NP_001016749.1 Gene:eif3g / 549503 XenbaseID:XB-GENE-6070198 Length:310 Species:Xenopus tropicalis


Alignment Length:127 Identity:26/127 - (20%)
Similarity:49/127 - (38%) Gaps:17/127 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   173 VKRERSRSASRSRSPRRRGRGS--------VERT---PPPKRRERSRSRTRSPSPKQ-----VRI 221
            :::|.:.....|...:.:..|:        |.:|   .||..|:....|..|..|.:     ..|
 Frog   167 MQKELAEQLGLSTGDKEKAPGAEPEPAQAPVSKTGKYVPPSLRDGGSRRGESMQPNRRADDNATI 231

  Fly   222 HVGRLTRNVTKDHVFEIFSSFGDVKNVEFPVDRFHPNFGRGVAFVEYATPEDCESAMKHMDG 283
            .|..|:.:..:..:.|:|..||.:..:....|: .....:|.||:.:...||...|:..:.|
 Frog   232 RVTNLSEDTRETDLQELFRPFGSISRIYLAKDK-TTGQSKGFAFISFHRREDAARAIAGVSG 292

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RnpS1NP_649903.1 RRM_RNPS1 221..294 CDD:409800 15/63 (24%)
eif3gNP_001016749.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..32
eIF3G 53..162 CDD:240597
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 179..229 9/49 (18%)
RRM_eIF3G_like 230..305 CDD:409842 15/64 (23%)
Blue background indicates that the domain is not in the aligned region.

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