Protein Alignment RnpS1 and rnps1

DIOPT Version :9

• Sequence 1: NP_649903.1
• Gene: RnpS1 / 41147
• FlyBaseID: FBgn0037707
• Length: 374
• Species: Drosophila melanogaster
• Sequence 2: NP_001015956.1
• Gene: rnps1 / 548710
• XenbaseID: XB-GENE-941526
• Length: 284
• Species: Xenopus tropicalis
• Alignment Length: 376
• Identity: 155/376 - (41%)
• Similarity: 191/376 - (50%)
• Gaps: 101/376 - (26%)

  Fly     4 AQSLAGEGEKEKDNKEKVAKEK-DGKATSGSSR-RDRERKRRGSASSSSDSRSSTSDSSSSRSSS 66
            |.|.:...|:.:|..:...||| .||..:...| ||:.|||| ||||.|.|.|.:..||||.|||
 Frog     2 APSPSKRKERSEDRAKDRGKEKAPGKEGTDKDRGRDKARKRR-SASSGSSSSSRSRSSSSSSSSS 65

  Fly    67 GSSRSSSSSSSDSSSSSSSSSSDSDRSEKNRRRGGGAAGKDKDKDKPSARSRSRSRTRSPRRVSK 131
            |||..|||.||.||:||.|.||.|.|                     |:.|.|.|.:.||.|
 Frog    66 GSSSGSSSGSSSSSASSRSGSSSSSR---------------------SSSSSSSSGSPSPSR--- 106

  Fly   132 SPRPGSKARKEPERDRDRRSRSRDRARRAGSNDRAAADSNNVKRERSRSASRSRSPRRRGRGSVE 196
                         |..|.|.|||.::::
 Frog   107 -------------RRHDNRRRSRSKSKQ------------------------------------- 121

  Fly   197 RTPPPKRRERSRSRTRSPSPKQVRIHVGRLTRNVTKDHVFEIFSSFGDVKNVEFPVDRFHPNFGR 261
                |||.|:.|.| |||||:..::|:|||||||||||:.||||::|.:|.::.||||:||:..:
 Frog   122 ----PKRDEKERKR-RSPSPRPTKVHIGRLTRNVTKDHILEIFSTYGKIKMIDMPVDRYHPHLSK 181

  Fly   262 GVAFVEYATPEDCESAMKHMDGGQIDGQEITVSPVVLV-KQRPPMRRPSPPMRR-PQNNRW-RSP 323
            |.|:||:..||:.|.|:||||||||||||||.|.|:.. ..|...||.|||.|. |....| |||
 Frog   182 GYAYVEFEAPEEAEKALKHMDGGQIDGQEITASAVLTPWPMRAMPRRFSPPRRMLPPPPMWRRSP 246

  Fly   324 PQFNRFNNRGGGGGGGGGRRQSPMRNRRSP-RRRSRSPIRRRRRSNSSDSS 373
            |:..|             |.:||  .|||| |||||||.|||.||.||.:|
 Frog   247 PRMRR-------------RSRSP--RRRSPVRRRSRSPARRRHRSRSSSNS 282

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RnpS1	NP_649903.1	RRM	<196..>301	CDD:223796	59/105 (56%)
		RRM_RNPS1	221..294	CDD:240811	46/72 (64%)
rnps1	NP_001015956.1	RRM	<118..>211	CDD:223796	54/134 (40%)
		RRM_RNPS1	141..214	CDD:240811	46/72 (64%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	107	1.000	Domainoid score	I6432
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	1	1.000	-	-
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	206	1.000	Inparanoid score	I3616
OMA	1	1.010	-	-		QHG53121
OrthoDB	1	1.010	-	-		D1524222at2759
OrthoFinder	1	1.000	-	-		FOG0003226
OrthoInspector	1	1.000	-	-		otm48193
Panther	1	1.100	-	-	LDO	PTHR15481
Phylome	0	0.000	Not matched by this tool.
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R1169
SonicParanoid	1	1.000	-	-		X3729
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	11	11.200