Protein Alignment RnpS1 and SC35

DIOPT Version :9

• Sequence 1: NP_649903.1
• Gene: RnpS1 / 41147
• FlyBaseID: FBgn0037707
• Length: 374
• Species: Drosophila melanogaster
• Sequence 2: NP_001188794.1
• Gene: SC35 / 53444
• FlyBaseID: FBgn0265298
• Length: 195
• Species: Drosophila melanogaster
• Alignment Length: 185
• Identity: 65/185 - (35%)
• Similarity: 83/185 - (44%)
• Gaps: 36/185 - (19%)

  Fly   191 GRGSVERTPPPKRRERSRSRTRSPSPKQVRIHVGRLTRNVTKDHVFEIFSSFGDVKNVEFPVDRF 255
            |.|.:....||.|.:           ..|.:.|..||...|.:.:..:|...|:|.::..|.||:
  Fly     6 GAGGLGAARPPPRID-----------GMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRY 59

  Fly   256 HPNFGRGVAFVEYATPEDCESAMKHMDGGQIDGQEITVSPVVLVKQRPPMRRPSPPMRRPQNNRW 320
             ....||.|||.:....|.|.|::.|||..:||:|:.|       |.....|||.|.|.....|
  Fly    60 -TRESRGFAFVRFYDKRDAEDALEAMDGRMLDGRELRV-------QMARYGRPSSPTRSSSGRR- 115

  Fly   321 RSPPQFNRFNNRGGGGGGGGGRRQSPMRNRRSPRRRSRSPIRR---RRRSNSSDS 372
                       .||||||.||||:|  |:|...|||||||.||   |.||..|.|
  Fly   116 -----------GGGGGGGSGGRRRS--RSRSPMRRRSRSPRRRSYSRSRSPGSHS 157

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RnpS1	NP_649903.1	RRM	<196..>301	CDD:223796	29/104 (28%)
		RRM_RNPS1	221..294	CDD:240811	24/72 (33%)
SC35	NP_001188794.1	RRM	<24..>100	CDD:223796	26/83 (31%)
		RRM_SRSF2_SRSF8	25..97	CDD:240757	25/79 (32%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R1169
SonicParanoid	0	0.000	Not matched by this tool.
	2	1.940