Protein Alignment RnpS1 and SC35

DIOPT Version :10

• Sequence 1: NP_649903.1
• Gene: RnpS1 / 41147
• FlyBaseID: FBgn0037707
• Length: 374
• Species: Drosophila melanogaster
• Sequence 2: NP_652612.1
• Gene: SC35 / 53444
• FlyBaseID: FBgn0265298
• Length: 195
• Species: Drosophila melanogaster
• Alignment Length: 193
• Identity: 66/193 - (34%)
• Similarity: 84/193 - (43%)
• Gaps: 45/193 - (23%)

  Fly   191 GRGSVERTPPPKRRERSRSRTRSPSPKQVRIHVGRLTRNVTKDHVFEIFSSFGDVKNVEFPVDRF 255
            |.|.:....||.|.:           ..|.:.|..||...|.:.:..:|...|:|.::..|.||:
  Fly     6 GAGGLGAARPPPRID-----------GMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRY 59

  Fly   256 HPNFGRGVAFVEYATPEDCESAMKHMDGGQIDGQEITVSPVVLVKQRPPMRRPSPPMRRPQNNRW 320
             ....||.|||.:....|.|.|::.|||..:||:|:.|       |.....|||.|.|.....|
  Fly    60 -TRESRGFAFVRFYDKRDAEDALEAMDGRMLDGRELRV-------QMARYGRPSSPTRSSSGRR- 115

  Fly   321 RSPPQFNRFNNRGGGGGGGGGRR----QSPMRNR-RSPRRR---------SRSPIRRRRRSNS 369
                       .||||||.||||    :||||.| ||||||         |.||.||.:.|.|
  Fly   116 -----------GGGGGGGSGGRRRSRSRSPMRRRSRSPRRRSYSRSRSPGSHSPERRSKFSRS 167

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RnpS1	NP_649903.1	RRM_RNPS1	221..294	CDD:409800	24/72 (33%)
SC35	NP_652612.1	RRM_SRSF2_SRSF8	25..97	CDD:409751	25/79 (32%)