DRSC/TRiP Functional Genomics Resources

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Protein Alignment RnpS1 and tial1

DIOPT Version :10

Sequence 1:NP_649903.1 Gene:RnpS1 / 41147 FlyBaseID:FBgn0037707 Length:374 Species:Drosophila melanogaster
Sequence 2:XP_005156854.1 Gene:tial1 / 394107 ZFINID:ZDB-GENE-040426-1547 Length:399 Species:Danio rerio


Alignment Length:156 Identity:34/156 - (21%)
Similarity:66/156 - (42%) Gaps:23/156 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   190 RGRGSVERTPPPKR-RERSRSRTR------SPSPKQVRIHVGRLTRNVTKDHVFEIFSSFGDVKN 247
            |...:..:.|.||. ::.|..:.|      ..||:...::.|.:...:|:..:.:.||.||.:..
Zfish   197 RTNWATRKPPAPKSVQDNSAKQLRFDEVVNQSSPQNCTVYCGGIQSGLTEHLMRQTFSPFGQIME 261

  Fly   248 VE-FPVDRFHPNFGRGVAFVEYATPEDCESAMKHMDGGQIDGQEITVSPVVLVKQRPPMRRPSPP 311
            :. ||        .:|.:|:.:::.|....|:..::|..|:|.   |......|:.|.|.:...|
Zfish   262 IRVFP--------EKGYSFIRFSSHESAAHAIVSVNGTTIEGH---VVKCYWGKESPDMAKNVQP 315

  Fly   312 MRRPQNNRWR----SPPQFNRFNNRG 333
            |...|..:|.    :|.|:.::...|
Zfish   316 MEYGQWGQWNQMYGNPQQYGQYMTNG 341

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RnpS1NP_649903.1 RRM_RNPS1 221..294 CDD:409800 15/73 (21%)
tial1XP_005156854.1 RRM_SF 9..108 CDD:473069
RRM2_TIAR 114..203 CDD:410029 1/5 (20%)
RRM3_TIAR 233..305 CDD:241064 16/82 (20%)
Blue background indicates that the domain is not in the aligned region.

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