Protein Alignment RnpS1 and tra2a

DIOPT Version :10

• Sequence 1: NP_649903.1
• Gene: RnpS1 / 41147
• FlyBaseID: FBgn0037707
• Length: 374
• Species: Drosophila melanogaster
• Sequence 2: NP_956710.1
• Gene: tra2a / 393388
• ZFINID: ZDB-GENE-040426-1391
• Length: 297
• Species: Danio rerio
• Alignment Length: 323
• Identity: 99/323 - (30%)
• Similarity: 142/323 - (43%)
• Gaps: 70/323 - (21%)

  Fly    88 SDSDRSEKNRRRGGGAAGKDKDKDKPS-ARSRSRSRTRSPRRVSKSPRPGSKARKEPERDRDRRS 151
            ||::..:..||....|:  ..|:..|: .:..|||.:.||.|.||  |..|::|.        ||
Zfish     2 SDTEEQQFQRRESRSAS--KSDRGSPAQPKMESRSGSPSPSRASK--RSDSRSRS--------RS 54

  Fly   152 RSRDRARRAGSNDRAAADSNNVKRERSRSASRSRSPRRRGRGSVERTPPPKRRERSRSRT----- 211
            :||.|:|| .||.|.:...::..|::||  |||.||..|.|.|...:|...||:.:.||:
Zfish    55 KSRSRSRR-HSNRRYSRSRSHSHRKKSR--SRSYSPESRRRRSRSASPNSNRRKHAGSRSSYSHD 116

  Fly   212 ------------RSPSPKQVRIHVGRLTRNVTKDHVFEIFSSFGDVKNVEFPVDRFHPNFGRGVA 264
                        .:|.|... :.|..|:...|:..:.|:||.:|.:..|....|: .....||.|
Zfish   117 SKKDSHNQGDARANPDPNTC-LGVFGLSLYTTERDLREVFSRYGSLAGVNVVYDQ-RTGRSRGFA 179

  Fly   265 FVEYATPEDCESAMKHMDGGQIDGQEITVSPVVLVKQRPPMRRPSPPMRRPQNNRWRSPPQFNRF 329
            ||.:...:|.:.||:..:|.::||:.|.|.  ..:.:||....|...|.||.:|
Zfish   180 FVYFEHIDDAKEAMERANGMELDGRRIRVD--YSITKRPHTPTPGIYMGRPTHN----------- 231

  Fly   330 NNRGGGGGGG----GGRRQSPMRNR---------------RSPRRRSRSPIRRRRRSNSSDSS 373
               |||||||    ||||:....:|               |..||||.||...|.||.|...|
Zfish   232 ---GGGGGGGGSSSGGRRRDSYYDRGYDRGYDRGYDEYDYRYSRRRSPSPYYSRYRSRSRSRS 291

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RnpS1	NP_649903.1	RRM_RNPS1	221..294	CDD:409800	21/72 (29%)
tra2a	NP_956710.1	RRM_TRA2	134..213	CDD:409798	22/82 (27%)