DRSC/TRiP Functional Genomics Resources

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Protein Alignment RnpS1 and Pabpn1l

DIOPT Version :9

Sequence 1:NP_649903.1 Gene:RnpS1 / 41147 FlyBaseID:FBgn0037707 Length:374 Species:Drosophila melanogaster
Sequence 2:NP_001007463.1 Gene:Pabpn1l / 382035 MGIID:2685954 Length:273 Species:Mus musculus


Alignment Length:189 Identity:46/189 - (24%)
Similarity:68/189 - (35%) Gaps:49/189 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   150 RSRSRDRARRAGSNDRAAADSNNVKRERSRSASRSRSPRRRGRGSV------------------E 196
            |:.......||||  ||.:|....:.|.:........|....:..|                  |
Mouse    35 RTEKTSLVPRAGS--RAGSDKEAEENEDASFLLSLLEPENLAKSPVFNQELEAIKLKLWAMEHAE 97

  Fly   197 RTPPP-----KRRERSRSRTRS-PSPKQVRIHVGRLTR-NVTKDH--VF--------------EI 238
            ..|.|     |..|..|:..|. .||:.|.....|.:: ||..||  ||              ..
Mouse    98 AQPEPPCVQRKATEEERAEVRQLLSPETVDCFFSRTSKENVEADHRSVFVGNVDYGGSAAELEAY 162

  Fly   239 FSSFGDVKNVEFPVDRF--HPNFGRGVAFVEYATPEDCESAMKHMDGGQIDGQEITVSP 295
            ||..|::..|....|:|  ||   :|.|::|:|:....::|: .:|.....|:.|.|.|
Mouse   163 FSPCGEIHRVTILCDKFSGHP---KGYAYIEFASHRSVKAAV-GLDESTFRGRVIKVLP 217

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RnpS1NP_649903.1 RRM <196..>301 CDD:223796 35/125 (28%)
RRM_RNPS1 221..294 CDD:240811 23/91 (25%)
Pabpn1lNP_001007463.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 22..57 8/23 (35%)
RRM <134..>227 CDD:223796 24/88 (27%)
RRM_SF 144..220 CDD:302621 20/78 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4209
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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