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Protein Alignment RnpS1 and Pabpn1l
DIOPT Version :9
Sequence 1: | NP_649903.1 |
Gene: | RnpS1 / 41147 |
FlyBaseID: | FBgn0037707 |
Length: | 374 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_001007463.1 |
Gene: | Pabpn1l / 382035 |
MGIID: | 2685954 |
Length: | 273 |
Species: | Mus musculus |
Alignment Length: | 189 |
Identity: | 46/189 - (24%) |
Similarity: | 68/189 - (35%) |
Gaps: | 49/189 - (25%) |
- Green bases have known domain annotations that are detailed below.
Fly 150 RSRSRDRARRAGSNDRAAADSNNVKRERSRSASRSRSPRRRGRGSV------------------E 196
|:.......|||| ||.:|....:.|.:........|....:..| |
Mouse 35 RTEKTSLVPRAGS--RAGSDKEAEENEDASFLLSLLEPENLAKSPVFNQELEAIKLKLWAMEHAE 97
Fly 197 RTPPP-----KRRERSRSRTRS-PSPKQVRIHVGRLTR-NVTKDH--VF--------------EI 238
..|.| |..|..|:..|. .||:.|.....|.:: ||..|| || ..
Mouse 98 AQPEPPCVQRKATEEERAEVRQLLSPETVDCFFSRTSKENVEADHRSVFVGNVDYGGSAAELEAY 162
Fly 239 FSSFGDVKNVEFPVDRF--HPNFGRGVAFVEYATPEDCESAMKHMDGGQIDGQEITVSP 295
||..|::..|....|:| || :|.|::|:|:....::|: .:|.....|:.|.|.|
Mouse 163 FSPCGEIHRVTILCDKFSGHP---KGYAYIEFASHRSVKAAV-GLDESTFRGRVIKVLP 217
|
Known Domains:
Indicated by green bases in alignment.
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
1 |
0.900 |
- |
- |
|
E1_KOG4209 |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
Isobase |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
0 | 0.000 |
Not matched by this tool. |
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
1 | 0.900 |
|
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