DRSC/TRiP Functional Genomics Resources

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Protein Alignment RnpS1 and rnps1

DIOPT Version :10

Sequence 1:NP_649903.1 Gene:RnpS1 / 41147 FlyBaseID:FBgn0037707 Length:374 Species:Drosophila melanogaster
Sequence 2:NP_956055.3 Gene:rnps1 / 327020 ZFINID:ZDB-GENE-030131-5228 Length:283 Species:Danio rerio


Alignment Length:370 Identity:147/370 - (39%)
Similarity:188/370 - (50%) Gaps:106/370 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 EKEKDNKEKVAKEKDGKATSGSSR---RDRERKRRGSASSSSDSRSSTSDSSSSRSSSGSSRSSS 73
            |:.:|...:..||| ..|..|:.:   ||:.||||.:::.||.||||:|.||||.||||||..||
Zfish    10 ERSEDKPRERGKEK-APAKEGAEKERGRDKIRKRRSNSTGSSSSRSSSSSSSSSGSSSGSSSGSS 73

  Fly    74 SSSSDSSSSSSSSSSDSDRSEKNRRRGGGAAGKDKDKDKPSARSRSRSRTRSPRRVSKSPRPGSK 138
            |||..|.|.|||||..|..|        |::|                          ||.|   
Zfish    74 SSSGSSRSGSSSSSRSSSSS--------GSSG--------------------------SPSP--- 101

  Fly   139 ARKEPERDRDRRSRSRDRARRAGSNDRAAADSNNVKRERSRSASRSRSPRRRGRGSVERTPPPKR 203
                              :||...|           |.||||.|:|:                ||
Zfish   102 ------------------SRRRHDN-----------RRRSRSKSKSQ----------------KR 121

  Fly   204 RERSRSRTRSPSPKQVRIHVGRLTRNVTKDHVFEIFSSFGDVKNVEFPVDRFHPNFGRGVAFVEY 268
            .:....:.||||||..::::|||||||||||:.|||:::|.:|.::.|.||.|||..:|.|:|||
Zfish   122 TDEKERKRRSPSPKPTKLYLGRLTRNVTKDHIQEIFATYGKIKMIDMPSDRLHPNVSKGYAYVEY 186

  Fly   269 ATPEDCESAMKHMDGGQIDGQEITVSPVVLVKQRPPMRRPSPPMRR-PQNNRW-RSPPQFNRFNN 331
            .:|||.:.|:||||||||||||||.:.::..:.||..||.|||.|. |....| |:||:..|   
Zfish   187 ESPEDAQKALKHMDGGQIDGQEITATAILAQRIRPAPRRLSPPRRMPPPPPMWRRTPPRMRR--- 248

  Fly   332 RGGGGGGGGGRRQSPMRNRRSP---RRRSRSPIRRRRRSNSSDSS 373
                      |.:||  .||||   |.|||||.|||.||.||.:|
Zfish   249 ----------RSRSP--RRRSPVRRRSRSRSPGRRRHRSRSSSNS 281

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RnpS1NP_649903.1 RRM_RNPS1 221..294 CDD:409800 45/72 (63%)
rnps1NP_956055.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..141 67/213 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 217..283 35/80 (44%)

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