Protein Alignment RnpS1 and srsf2b

DIOPT Version :9

• Sequence 1: NP_649903.1
• Gene: RnpS1 / 41147
• FlyBaseID: FBgn0037707
• Length: 374
• Species: Drosophila melanogaster
• Sequence 2: NP_955945.2
• Gene: srsf2b / 323700
• ZFINID: ZDB-GENE-030131-2420
• Length: 220
• Species: Danio rerio
• Alignment Length: 158
• Identity: 56/158 - (35%)
• Similarity: 72/158 - (45%)
• Gaps: 29/158 - (18%)

  Fly   221 IHVGRLTRNVTKDHVFEIFSSFGDVKNVEFPVDRFHPNFGRGVAFVEYATPEDCESAMKHMDGGQ 285
            :.|..||...:.:.:..:|..:|.|.:|..|.||:... .||.|||.:....|.|.||..|||..
Zfish    16 LKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKE-SRGFAFVRFHDKRDAEDAMDAMDGAI 79

  Fly   286 IDGQEITVSPVVLVKQRPPMRRPSPPMRRPQNNRWRSPPQFNRFNNRGGGG----GGGGGRRQSP 346
            :||:|:                      |.|..|:..||  :.:...||||    |||||.|:..
Zfish    80 LDGREL----------------------RVQMARYGRPP--DSYYGGGGGGRRGSGGGGGSRRHG 120

  Fly   347 MRNRRSPRRRSRSPIRRRRRSNSSDSSR 374
            .|..||||||.||..|.|.||.|...||
Zfish   121 ARRSRSPRRRRRSRSRSRSRSRSRSRSR 148

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RnpS1	NP_649903.1	RRM	<196..>301	CDD:223796	25/79 (32%)
		RRM_RNPS1	221..294	CDD:240811	25/72 (35%)
srsf2b	NP_955945.2	RRM	<5..>91	CDD:223796	27/97 (28%)
		RRM_SRSF2_SRSF8	16..88	CDD:240757	26/94 (28%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R1169
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	2	1.940