Protein Alignment RnpS1 and Pabpn1l

DIOPT Version :9

• Sequence 1: NP_649903.1
• Gene: RnpS1 / 41147
• FlyBaseID: FBgn0037707
• Length: 374
• Species: Drosophila melanogaster
• Sequence 2: NP_001107251.1
• Gene: Pabpn1l / 307920
• RGDID: 1562761
• Length: 269
• Species: Rattus norvegicus
• Alignment Length: 303
• Identity: 60/303 - (19%)
• Similarity: 94/303 - (31%)
• Gaps: 122/303 - (40%)

  Fly    87 SSDSDRSEKNRRRGGGAAGK-DKDKDKPSARSRSRSRTR----------SPRRVSKS-------- 132
            |||.:      .:|.||.|: :|....|||.|...:...          .|..::||
  Rat    22 SSDPE------AQGWGAWGRTEKTSLVPSAGSDKEAEENEDSSFLLSLLEPENLAKSPVYNQELE 80

  Fly   133 ---------------PRPGSKARKEPERDRDRRSRSRDRARRAGSNDRAAADSNNVKRERSRSAS 182
                           |.|.|..||..|.:|                               ..|.
  Rat    81 AIRLKLWTMEHAEVLPEPPSVQRKATEEER-------------------------------AEAR 114

  Fly   183 RSRSPRRRG---RGSVERTPPPKRRERSRSRTRSPSPKQVRIHVGRLTRNVTKDHVFEIFSSFGD 244
            ...||...|   .|:      ||....:..|:         ::||.:....:...:...||..|:
  Rat   115 ELLSPETIGCFFPGA------PKENVEADHRS---------VYVGNVDYGGSAAELEAYFSPCGE 164

  Fly   245 VKNVEFPVDRF--HPNFGRGVAFVEYATPEDCESAMKHMDGGQIDGQEITVSP------------ 295
            :..|....|:|  ||   :|.|::|:|:....::|:: :|.....|:.|.|.|
  Rat   165 IHRVTILCDKFSGHP---KGYAYIEFASKSSVQAAVR-LDESTFRGRVIKVLPKRTNFPGISSTD 225

  Fly   296 -----------VVLVK---QRPPMRRPSPPMR-RPQNNRWRSP 323
                       ...::   ||.|..||....| |.:.:.|.||
  Rat   226 RGGLRTHSSSRAAFLQGSLQRKPRLRPHGQSRGRGRASPWFSP 268

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RnpS1	NP_649903.1	RRM	<196..>301	CDD:223796	23/132 (17%)
		RRM_RNPS1	221..294	CDD:240811	18/74 (24%)
Pabpn1l	NP_001107251.1	Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	26..54		9/33 (27%)
		RRM	<129..>223	CDD:223796	23/112 (21%)
		RRM_SF	140..216	CDD:302621	20/88 (23%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	240..269		10/29 (34%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG4209
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.900