DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment RnpS1 and Sart3

DIOPT Version :9

Sequence 1:	NP_649903.1	Gene:	RnpS1 / 41147	FlyBaseID:	FBgn0037707	Length:	374	Species:	Drosophila melanogaster
Sequence 2:	XP_006249563.1	Gene:	Sart3 / 304582	RGDID:	1311646	Length:	978	Species:	Rattus norvegicus

Alignment Length:	237	Identity:	48/237 - (20%)
Similarity:	99/237 - (41%)	Gaps:	39/237 - (16%)

- Green bases have known domain annotations that are detailed below.

  Fly   105 GKDKDKDKPSARSRSRSRTRSPRRVSKSPRPGSKARKEPERDRDRRS-RSRDRA----RRAGSND 164
            |..:|.|....::.:|....:.:|:..:.:..:..::|.|:...|:. |:..:|    :..|::.
  Rat   574 GTLEDWDLAIQKTETRLARVNEQRMKAAEKEAALVQQEEEKAEQRKKVRAEKKALKKKKTRGADK 638

  Fly   165 RAAADSNNVKRERSRSASRSRSPRRRGRGS---------------------VERTPPPKRRERSR 208
            |.|.:.:: :||.........|.|||...|                     ::..||.|::|::.
  Rat   639 RKAGEDDD-ERECGEEEEEQPSKRRRMENSLASGVASAKEEETKLSGKCLTIDVAPPSKQKEKAA 702

  Fly   209 SRTR-------SPSPKQVRIHVGRLTRNVTKDHV--FEIFSSFGDVKNVEFPVDRFHPNFGRGVA 264
            |..|       ..|...|.:.|..|..::.:..|  ..:|.:.|:|..:. |:.....:| ||..
  Rat   703 SLKRDMPKVAHDSSKDSVTVFVSNLPYSIEEPEVKLRPLFEACGEVVQIR-PIFSNRGDF-RGYC 765

  Fly   265 FVEYATPEDCESAMKHMDGGQIDGQEITVSPVVLVKQRPPMR 306
            :||:...:..:.|: .:|...::|:.:.|||.|...:.|..:
  Rat   766 YVEFKEEKSAQQAL-DLDRKNVEGRPMFVSPCVDKSKNPDFK 806

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
RnpS1	NP_649903.1	RRM	<196..>301	CDD:223796	27/113 (24%)
RnpS1	NP_649903.1	RRM_RNPS1	221..294	CDD:240811	15/74 (20%)
Sart3	XP_006249563.1	RNA14	99..>477	CDD:227438
		NRDE-2	350..>503	CDD:285605
		RRM1_SART3	721..794	CDD:240837	15/75 (20%)
		RRM2_SART3	815..895	CDD:240838
		LSM_int_assoc	893..951	CDD:293211
		Lsm_interact	960..977	CDD:283133
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR15481
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	1.100