DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RnpS1 and CSTF2T

DIOPT Version :10

Sequence 1:NP_649903.1 Gene:RnpS1 / 41147 FlyBaseID:FBgn0037707 Length:374 Species:Drosophila melanogaster
Sequence 2:NP_056050.1 Gene:CSTF2T / 23283 HGNCID:17086 Length:616 Species:Homo sapiens


Alignment Length:118 Identity:29/118 - (24%)
Similarity:49/118 - (41%) Gaps:16/118 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   197 RTPPPKRRERSRSRTRSPSPKQVRIHVGRLTRNVTKDHVFEIFSSFGDVKNVEFPVDRFHPNFGR 261
            |.|...|..||             :.||.:....|::.:.:|||..|.|.:.....|| .....:
Human     7 RDPAMDRSLRS-------------VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDR-ETGKPK 57

  Fly   262 GVAFVEYATPEDCESAMKHMDGGQIDGQEITVSPVVLVKQRPPMRR--PSPPM 312
            |..|.||...|...|||::::|.:..|:.:.|......|.:..::.  |:.|:
Human    58 GYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAAPI 110

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RnpS1NP_649903.1 RRM_RNPS1 221..294 CDD:409800 20/72 (28%)
CSTF2TNP_056050.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 24/97 (25%)
CSTF2_hinge 112..191 CDD:433869
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 203..241
PRK12323 <242..>387 CDD:481241
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 262..418
9 X 5 AA tandem repeats of M-E-T-R-[AG] 418..462
9 X 5 AA tandem repeats of G-[AT]-G-[MI]-Q 505..549
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 542..573
CSTF_C 572..612 CDD:464130
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.