Sequence 1: | NP_649903.1 | Gene: | RnpS1 / 41147 | FlyBaseID: | FBgn0037707 | Length: | 374 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001073596.1 | Gene: | Rnps1 / 19826 | MGIID: | 97960 | Length: | 305 | Species: | Mus musculus |
Alignment Length: | 379 | Identity: | 157/379 - (41%) |
---|---|---|---|
Similarity: | 195/379 - (51%) | Gaps: | 103/379 - (27%) |
- Green bases have known domain annotations that are detailed below.
Fly 3 RAQSLAGEGEKEKDNKEKVAKE--KDGKATSGSSRRDRER---KRRGSASSSSDSRSSTSDSSSS 62
Fly 63 RSSSGSSRSSSSSSSDSSSSSSSSSSDSDRSEKNRRRGGGAAGKDKDKDKPSARSRSRSRTRSPR 127
Fly 128 RVSKSPRPGSKARKEPERDRDRRSRSRDRARRAGSNDRAAADSNNVKRERSRSASRSRSPRRRGR 192
Fly 193 GSVERTPPPKRRERSRSRTRSPSPKQVRIHVGRLTRNVTKDHVFEIFSSFGDVKNVEFPVDRFHP 257
Fly 258 NFGRGVAFVEYATPEDCESAMKHMDGGQIDGQEITVSPVVLVKQRPPMRRPSPPMRR-PQNNRW- 320
Fly 321 RSPPQFNRFNNRGGGGGGGGGRRQSPMRNRRSP-RRRSRSPIRRRRRSNSSDSS 373 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
RnpS1 | NP_649903.1 | RRM | <196..>301 | CDD:223796 | 58/104 (56%) |
RRM_RNPS1 | 221..294 | CDD:240811 | 44/72 (61%) | ||
Rnps1 | NP_001073596.1 | Necessary for interaction with the cleaved p110 isoform of CDC2L1. /evidence=ECO:0000250 | 1..220 | 103/279 (37%) | |
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1..170 | 78/229 (34%) | |||
Necessary for interaction with SRP54, nuclear localization and exon-skipping. /evidence=ECO:0000250 | 1..161 | 74/220 (34%) | |||
Necessary for interactions with UPF2 and UPF3B and UPF2-dependent NMD. /evidence=ECO:0000250 | 69..121 | 31/82 (38%) | |||
Necessary for interaction with PNN and exon-skipping. /evidence=ECO:0000250 | 156..242 | 49/85 (58%) | |||
Interaction with SAP18 and ACIN1. /evidence=ECO:0000250 | 159..244 | 46/84 (55%) | |||
RRM_RNPS1 | 163..236 | CDD:409800 | 44/72 (61%) | ||
Necessary for interaction with TRA2B, nuclear localization and exon-skipping. /evidence=ECO:0000250 | 238..305 | 39/81 (48%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 240..305 | 38/79 (48%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 103 | 1.000 | Domainoid score | I6780 |
eggNOG | 1 | 0.900 | - | - | E1_KOG4209 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 1 | 1.050 | 213 | 1.000 | Inparanoid score | I3627 |
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 1 | 1.010 | - | - | QHG53121 | |
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 1 | 1.000 | - | - | FOG0003226 | |
OrthoInspector | 1 | 1.000 | - | - | oto93009 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_103512 | |
Panther | 1 | 1.100 | - | - | LDO | PTHR15481 |
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R1169 |
SonicParanoid | 1 | 1.000 | - | - | X3729 | |
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 1 | 0.960 | - | - | ||
12 | 11.950 |