DRSC/TRiP Functional Genomics Resources

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Protein Alignment RnpS1 and Y51H4A.22

DIOPT Version :9

Sequence 1:NP_649903.1 Gene:RnpS1 / 41147 FlyBaseID:FBgn0037707 Length:374 Species:Drosophila melanogaster
Sequence 2:NP_502979.2 Gene:Y51H4A.22 / 190157 WormBaseID:WBGene00013116 Length:283 Species:Caenorhabditis elegans


Alignment Length:22 Identity:9/22 - (40%)
Similarity:11/22 - (50%) Gaps:0/22 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 SSRSSSSSSSDSSSSSSSSSSD 89
            ||.|.:...||:..|..|..||
 Worm    79 SSSSENEFYSDAKDSIDSMLSD 100

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RnpS1NP_649903.1 RRM <196..>301 CDD:223796
RRM_RNPS1 221..294 CDD:240811
Y51H4A.22NP_502979.2 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4209
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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