Protein Alignment RnpS1 and rnp-5

DIOPT Version :10

• Sequence 1: NP_649903.1
• Gene: RnpS1 / 41147
• FlyBaseID: FBgn0037707
• Length: 374
• Species: Drosophila melanogaster
• Sequence 2: NP_001370330.1
• Gene: rnp-5 / 175244
• WormBaseID: WBGene00004388
• Length: 289
• Species: Caenorhabditis elegans
• Alignment Length: 349
• Identity: 140/349 - (40%)
• Similarity: 163/349 - (46%)
• Gaps: 85/349 - (24%)

  Fly    39 ERKRRGSASSSSDSRSSTSDSSSSRSSSGSSRSSSSSSSDSSSSSSSSSSDS------DRSEKNR 97
            |.|:|  |.|||.|.||:|.||||.|||..|||||||||..|.|.|....|:      .||....
 Worm     6 ETKKR--ARSSSSSSSSSSGSSSSGSSSSGSRSSSSSSSGRSRSRSPRRRDTRPPARGGRSRSPI 68

  Fly    98 RRGGGAAGKDKDKDKPSARSRSRSRTRSPRRVSKSPRPGSKARKEPERDRDRRSRSRDRARRAGS 162
            |||....|...|:|:|...|.|..|.|.|     ||.|       |.|||..||.||.|
 Worm    69 RRGSPPRGARADRDRPMRPSPSPPRRRRP-----SPSP-------PRRDRRDRSGSRQR------ 115

  Fly   163 NDRAAADSNNVKRERSRSASRSRSPRRRGRGSVERTPPPKRRERSRSRTRSPSPKQVRIHVGRLT 227
                            |.||..|||                      ..||.||.: |:.:..|:
 Worm   116 ----------------RRASPRRSP----------------------AARSASPAK-RVVIKNLS 141

  Fly   228 RNVTKDHVFEIFSSFGDVKNVEFPVDRFHPNFGRGVAFVEYATPEDCESAMKHMDGGQIDGQ--- 289
            |||.|.|:.||||.:|.:|||:.|.||||.:..||..:|||...||.|.::||||||||||.
 Worm   142 RNVLKTHLEEIFSIYGAIKNVDLPPDRFHNHVHRGYGYVEYDNLEDAEKSIKHMDGGQIDGMAVH 206

  Fly   290 -EITV--SPVVLVKQRPPMRRPSPPMR---RPQNNRWRSPPQFNRFNNRGGGGGGG-----GGRR 343
             |:|:  ..|...::..|.||.|||.|   .|.....||||...|.:..||.|.|.     ||
 Worm   207 VEMTIGRQSVPFQRRSSPFRRRSPPPRDRMSPMRRGGRSPPPHRRRSPMGGRGSGANNMPLGG-- 269

  Fly   344 QSPMRNRRSPRRRSRSPIRRRRRS 367
              |.|.||:  .|||||..||.||
 Worm   270 --PNRFRRA--SRSRSPAGRRSRS 289

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RnpS1	NP_649903.1	RRM_RNPS1	221..294	CDD:409800	39/78 (50%)
rnp-5	NP_001370330.1	RRM_RNPS1	135..208	CDD:409800	37/72 (51%)