Protein Alignment RnpS1 and pabp-2

DIOPT Version :9

• Sequence 1: NP_649903.1
• Gene: RnpS1 / 41147
• FlyBaseID: FBgn0037707
• Length: 374
• Species: Drosophila melanogaster
• Sequence 2: NP_492504.1
• Gene: pabp-2 / 172768
• WormBaseID: WBGene00003904
• Length: 205
• Species: Caenorhabditis elegans
• Alignment Length: 217
• Identity: 52/217 - (23%)
• Similarity: 81/217 - (37%)
• Gaps: 67/217 - (30%)

  Fly   169 DSNNVKRERSR---------------SASRSRSPRRRGRGSVERTPPPKRRERSRSRTRSPSPKQ 218
            |.|.::.|:.:               ::|:|.|.:..      .||..|....::|
 Worm    30 DLNEIEEEQKKLKAIQNEMVGHMNLNTSSQSNSSQSL------LTPEEKAEADAKS--------- 79

  Fly   219 VRIHVGRLTRNVTKDHVFEIFSSFGDVKNVEFPVDRF--HPNFGRGVAFVEYATPEDCESAMKHM 281
              ::||.:....|.:.:.:.|...|.|..|....|||  ||   :|.|:||:...|..::|:. |
 Worm    80 --VYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHP---KGFAYVEFTEKEGMQNALA-M 138

  Fly   282 DGGQIDGQEITVSPVVLVKQRPPMRRPSPPMRRPQNNRWRSPPQFNRFNNRGGGGGG-------- 338
            ....:.|::|.|.|          :|.:.|.....|.    ||    |..|||.|.|
 Worm   139 TDSLLRGRQIKVDP----------KRTNKPGMSTTNR----PP----FRGRGGRGRGNVIVKYVY 185

  Fly   339 GGGRRQSPMRNRRSPRRRSRSP 360
            .||.|.   |.|.:.||...:|
 Worm   186 AGGFRP---RGRGARRRPGFAP 204

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RnpS1	NP_649903.1	RRM	<196..>301	CDD:223796	27/106 (25%)
		RRM_RNPS1	221..294	CDD:240811	21/74 (28%)
pabp-2	NP_492504.1	RRM_SF	79..154	CDD:388407	24/99 (24%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG4209
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.810