DRSC/TRiP Functional Genomics Resources

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Protein Alignment RnpS1 and srsf4

DIOPT Version :10

Sequence 1:NP_649903.1 Gene:RnpS1 / 41147 FlyBaseID:FBgn0037707 Length:374 Species:Drosophila melanogaster
Sequence 2:XP_004911639.2 Gene:srsf4 / 100038227 XenbaseID:XB-GENE-493077 Length:741 Species:Xenopus tropicalis


Alignment Length:389 Identity:108/389 - (27%)
Similarity:155/389 - (39%) Gaps:66/389 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 RAQSLAGEGEKEKDNKEKVAKEKDGKATSGSSRRDRERKRRGSASSSSDSRSSTSDSSSSRSSSG 67
            ||...|.:|.:...:..|..:.....:....:.|...:.||.|.|:|...|:|.|.|...|:|..
 Frog   308 RASRSASKGRRASRSASKGRRASRSASKGRRASRSASKGRRASRSASKGRRASRSASKGRRASRS 372

  Fly    68 SSR----SSSSSSSDSSSSSSSSSSDSDRSEKNRRRGGGAAGKDKDKDKPSARSRSRSRT----- 123
            :|:    |.|:|....:|.|:|....:.||....||...:|.|.:.:.:..::.|..||:     
 Frog   373 ASKGRRASRSASKGRRASRSASKERRASRSASKGRRTSRSASKGRQESRSVSKGRRESRSVSKGR 437

  Fly   124 RSPRRVSKSPRPG---SKARKEPER-DRDRR---SRSRDRARRAGSNDRAAADSNNVKRERSRSA 181
            |..|.|||..|..   ||.|:|... .::||   ..|:.||.|:.|.|||.....:...|||:|.
 Frog   438 RESRSVSKGRRESRSVSKGRRETRSVSKERRGSSDHSKGRASRSQSKDRANGRDKSADSERSKSR 502

  Fly   182 SRSRSPRRRGRGSVERTPPPKRRERSRSRTRSPSPKQVRIHVGRLTRNVTKDHVFEIFSSFGDVK 246
            ||||..|.....|.||   .:|..||..|:||.|.::      ||:|:.::|......|:.....
 Frog   503 SRSRGRRETDSQSKER---KERVSRSTERSRSRSKER------RLSRSNSRDKKGRNESTERQEL 558

  Fly   247 NVEFPVDRFHPNFGRGVAFVEYATPEDCESAMKHMDGGQIDGQEITVSPVVLVKQRPPMRRPSPP 311
            |.. ..||.|....|..:                                   |.|..:|.....
 Frog   559 NSR-KRDRSHSRERRNRS-----------------------------------KDRDHIRSKDKH 587

  Fly   312 MRRPQNNRWRSPPQFNRFNNRGGGGGGGGGRRQSPMRNRRS--PRRRSRSPIRRRRRSNSSDSS 373
            .|....:|.||.   :|..:|.........|.:|..|:|||  .||.|||..|.|:||....||
 Frog   588 SRNRSRDRKRSR---SRDRSRERQSKRSRDRSRSKERSRRSERSRRSSRSKERSRKRSRERRSS 648

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RnpS1NP_649903.1 RRM_RNPS1 221..294 CDD:409800 10/72 (14%)
srsf4XP_004911639.2 RRM_SF 6..77 CDD:473069
RRM_SF 104..176 CDD:473069
PTZ00121 <248..716 CDD:173412 108/389 (28%)
PRK12678 255..>469 CDD:237171 44/160 (28%)
Blue background indicates that the domain is not in the aligned region.

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