DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment by and Tns4

DIOPT Version :9

Sequence 1:NP_001163569.1 Gene:by / 41144 FlyBaseID:FBgn0000244 Length:720 Species:Drosophila melanogaster
Sequence 2:NP_001020052.1 Gene:Tns4 / 303517 RGDID:1310402 Length:718 Species:Rattus norvegicus


Alignment Length:701 Identity:196/701 - (27%)
Similarity:288/701 - (41%) Gaps:178/701 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 NSLPFSYGIAKTSTPLRKTPTPTRVDS---------------FLDFDFGPTNTNVNSNSS---SN 117
            ::|...| |..|||..|...:|.|..|               ||..|. |..|..:||.|   |.
  Rat   140 DALDIKY-IEVTSTRSRCLDSPQRCSSPCVTPPFGSPRSGGLFLSRDI-PRETRSSSNESLIFSG 202

  Fly   118 NGGTGDMIKPPTRLTSPLLVRKTLGNAVSPTSSTNTNTIANTYHYTSSSATPTPVRDNFEQLLRE 182
            |.|.|         :||                          |..||.:...|.|::       
  Rat   203 NQGRG---------SSP--------------------------HTPSSLSNSIPCRES------- 225

  Fly   183 RREKVYNEYRNLDRESSGERARVAP--APPQRQYYPSDGYGIGLKNDSNGTLYRKSPSSNGKSTK 245
                               ||..:|  .||        |:..||:....|:  |.|..|....:.
  Rat   226 -------------------RASGSPLATPP--------GWEKGLRAPQWGS--RVSTLSASPVSD 261

  Fly   246 YNYDFEFNLNLDDVRPEPTPYTTRNIHFEDLRLDQDVPDGVVNRRTMERNYHTINSLETTHKRQQ 310
            .:|.|..|.:|........|.::|:                                        
  Rat   262 ISYVFGSNQSLPHSSLSSYPPSSRS---------------------------------------- 286

  Fly   311 LEPLEQLGAVYGQNHMEETLTRTRRDLSASTSTSKSTSPLPAIGVPAIAPASPIYATSTKRVSNP 375
                  ||:....:....:|.|..:.:.:|.:...| :|:..:|.|...|::|:...........
  Rat   287 ------LGSPASSSSSLHSLDRGSQCVRSSDAQVPS-NPIVGMGQPQAVPSTPVAKEQASSCPPS 344

  Fly   376 NTNGQQQM-------TPSPTSRP--ETPAF-------PVTPRTPFGASSSSSASLAPTTQLPPES 424
            .||....:       .|.|.|.|  :||.:       ..:|.....|:.|.|.:|.......|..
  Rat   345 VTNSMADIPIVLINGNPEPQSPPAQQTPRYQDSVQSRATSPSHLCQATKSHSKTLPDVPLTSPSH 409

  Fly   425 IYQTGPRRG-----VPPALQPLEVSAD---SVQFARSSSQFWYKPNLTREDAIALLASAQPGTFL 481
            :.|......     ||....|...:.|   :::|...:|::|.||::|||.||.||.:.:||||:
  Rat   410 LCQATKSHSKTLPDVPLTASPESPAKDMQPTMKFVMDTSKYWLKPSITREQAINLLRTEKPGTFV 474

  Fly   482 VRDSTTYKDSYGLVVRVSQPP------PG--SQELVRHFLIEPTKGGVHLKGCDDEPVFTSLSAL 538
            :|||::|:.|:||.::|.:.|      ||  |.:.:||||:|.:..||||||.|:||.|.||||.
  Rat   475 IRDSSSYRGSFGLALKVQETPASAPNRPGEDSTDFIRHFLVESSAKGVHLKGADEEPYFGSLSAF 539

  Fly   539 VFEHSISQLALPCLLRLPDRDI---VPPVRATTPAQQHLLAHGAATNVLWLYSCDTESLTGNEAI 600
            |.:|||..|||||.|.:|.:::   .|...:.|..|...|...|..:.|:|.|...|:|:|..|:
  Rat   540 VCQHSIMALALPCKLTIPQKELGGAEPASDSPTHGQTSCLKISAGCHTLYLTSVSVETLSGALAV 604

  Fly   601 RKAIRQMYGQQPLPQPTEVHFKVSSQGITLTDNTRKKFFRKHYKADVISHCAIDPENRMWTSEGE 665
            :|||..|..:..||.||.|||||:.|||||||..||.|||:||....:..|.:|||.|.|....:
  Rat   605 QKAISVMLERDVLPTPTVVHFKVTEQGITLTDVQRKVFFRRHYPLIALRFCGMDPEQRKWQKYCK 669

  Fly   666 SDKKTIFAFVARRSHSSTDNQCHVFCDLSVSQPAAAIVSFANRTL-PTEKL 715
            ..:  ||.|||:......:|.||:|.:...:|||:.::|.....| .||::
  Rat   670 PSR--IFGFVAKSQTEPQENACHLFAEYDAAQPASQVISLVTALLKDTERV 718

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
byNP_001163569.1 SH2_Tensin_like 454..559 CDD:198181 57/112 (51%)
PTB_tensin 578..711 CDD:269924 55/133 (41%)
Tns4NP_001020052.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 188..244 23/124 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 272..437 32/211 (15%)
SH2 447..560 CDD:301589 57/112 (51%)
PTB_tensin 583..712 CDD:269924 54/130 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 233 1.000 Inparanoid score I3334
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0012562
OrthoInspector 1 1.000 - - otm46409
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45734
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
66.060

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