DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment JHDM2 and Hr

DIOPT Version :9

Sequence 1:NP_001287255.1 Gene:JHDM2 / 41143 FlyBaseID:FBgn0037703 Length:854 Species:Drosophila melanogaster
Sequence 2:NP_077340.3 Gene:Hr / 60563 RGDID:620634 Length:1181 Species:Rattus norvegicus


Alignment Length:845 Identity:221/845 - (26%)
Similarity:329/845 - (38%) Gaps:179/845 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 RACCEVENPTLKAEQRVQQEEESLGQVPPLTEEEQQRHDEFRNSGSIFLQDLPCFKLQQAQPIAG 114
            ||..|....:..::...||:||..|     ..:.:.|..|.|      |:|..|     ...:||
  Rat   442 RAWQETPETSTGSKAEAQQQEEQRG-----PRDGRIRLRESR------LEDTSC-----QHHLAG 490

  Fly   115 SSPIPKCRECRRR-NLATTEGEPSSVSDVYCRFYEFRRLQFNENGELCVVGFPNPYSEPSPEDIA 178
            .:..|.|.:.... .:.|:..:.|            .||...|              :|..||..
  Rat   491 VTQCPSCVQAAGEVEILTSHSQKS------------HRLPLEE--------------KPLEEDSC 529

  Fly   179 IWQPDKNTPPTSGYMDIQVCRYILLHAGDQFCYIWHQEAEALSLHQNTDGTIAWKKAVKGTREIC 243
            ....:.........::..:.:::|...||:.|.:..:|.|||:..|......|..:...|....|
  Rat   530 ATSEEGGGSSPEASINKGLAKHLLSGLGDRLCRLLRKEREALAWAQREGQGPAMTEDSPGIPHCC 594

  Fly   244 DVCDTTLFNYHWTCRKCGFGVCLDC------VKDR-KEGLRLRRAENAAQKGCDEYHWLLCSDPS 301
            ..|...|||.||.|..|...:|:.|      .|:| |.|.|.:|.::.||:.             
  Rat   595 SRCHHGLFNTHWRCSHCSHRLCVACGRIAGAGKNREKTGSREQRTDDCAQEA------------- 646

  Fly   302 GPQEHVLTELMLTQIIAGDALNVLGRLLHEVRTLWQVPQVCGCLLSKQAI---EDAQSKEVIQ-- 361
               .|....|:|||.::..||..|..::|:|...:.:...|.|.:..:..   :..|.||..:  
  Rat   647 ---GHAACSLILTQFVSSQALAELSTVMHQVWAKFDIRGHCFCQVDARVWAPGDGGQQKEPTEKT 708

  Fly   362 ----------DMIKESQLKQHT--SYSSLASEQKVHQQQRLDQL------HATKLEFARE-LGVD 407
                      |..:...:|:.|  |..|.|.::..........|      .|.||....| :.:.
  Rat   709 PPAPQLSCNGDSNRTKDIKEETPDSTESPAEDRAGRSPLPCPSLCELLASTAVKLCLGHERIHMA 773

  Fly   408 YVPGRVWTKETLGKDPITTAFDN------------------LKHINFLRKGLAGLRRFLPPRTMT 454
            :.|   .|......|.||...|:                  |:..:.|||||:     ||...: 
  Rat   774 FAP---VTPALPSDDRITNILDSIIAQVVERKIQEKALGPGLRAGSGLRKGLS-----LPLSPV- 829

  Fly   455 FAYSTQLAPGVPHEFLCDGRLLRLTDAMHPDNRVLFQEVWKCGQPVMISEVARSLNLDLWHPQAF 519
               .|:|:|        .|.||.|.:........||||.|:.||||::|.:.::|.|.||..:| 
  Rat   830 ---RTRLSP--------PGALLWLQEPRPKHGFRLFQEHWRQGQPVLVSGIQKTLRLSLWGMEA- 882

  Fly   520 CRDFGDKPNDLINCLNGN------LVPNQP----MRHFWEGFQCMTKRLPDAYGKPMLLKLKDWP 574
                       :..|.|.      |.|.||    ...||:||.....|.....|..:||..   |
  Rat   883 -----------LGTLGGQVQTLTALGPPQPTSLDSTAFWKGFSHPEARPKLDEGSVLLLHR---P 933

  Fly   575 PGDDFAEILPTRFADLMKGLPMPEYTLRTGNLNIASCLPKMFVPPDLGPKMYNAYGSALHPDK-G 638
            .||..    .:|..:|...||:|||....|.||:||.||.......|.|:::.|||...|... |
  Rat   934 LGDKD----ESRVENLASSLPLPEYCAHQGKLNLASYLPLGLTLHPLEPQLWAAYGVNSHRGHLG 994

  Fly   639 TTNLHLDISDAVNIMVYVGIPQDGDTRPQMAATQKAIEIGGCDYITRARCQSPDVLPGALWHIFP 703
            |.||.:::||.::|:|:.    :....|...| ||.. :.|.|   .....||......:||:|.
  Rat   995 TKNLCVEVSDLISILVHA----EAQLPPWYRA-QKDF-LSGLD---GEGLWSPGSQTSTVWHVFR 1050

  Fly   704 ARDADKIRDLLNRVTLEKGFRLEPDHDPIHDQNWYLDDKLRARLFKEYGVEGHPIVQCLGDAVFI 768
            |:||.:||..|..|.......|||.    ...:.|||..||.||.:|:||....::|..|:||.:
  Rat  1051 AQDAQRIRRFLQMVCPAGAGTLEPG----APGSCYLDSGLRRRLREEWGVSCWTLLQAPGEAVLV 1111

  Fly   769 PAGAPHQVQNLHNCIKVAEDFVSPENITHCYHLTHEFRRLSHSHTNHEDKL---QIKNIIYHAIK 830
            |||||||||.|.:.|.|.:.|:|||.......|.|:...|...|     ::   |:...::.|:|
  Rat  1112 PAGAPHQVQGLVSTISVTQHFLSPETSALSAQLCHQGASLPPDH-----RMLYAQMDRAVFQAVK 1171

  Fly   831  830
              Rat  1172  1171

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
JHDM2NP_001287255.1 JmjC 605..657 CDD:214721 20/52 (38%)
cupin_like 694..789 CDD:304367 39/94 (41%)
HrNP_077340.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 311..378
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 413..472 8/34 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 509..543 7/59 (12%)
LXXLL motif 1 560..564 1/3 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 696..745 9/48 (19%)
LXXLL motif 2 752..756 1/3 (33%)
cupin_like <1081..1132 CDD:304367 26/50 (52%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166350572
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1185631at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12549
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.950

Return to query results.
Submit another query.