DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment JHDM2 and Jmjd1c

DIOPT Version :9

Sequence 1:NP_001287255.1 Gene:JHDM2 / 41143 FlyBaseID:FBgn0037703 Length:854 Species:Drosophila melanogaster
Sequence 2:XP_006256421.2 Gene:Jmjd1c / 171120 RGDID:708458 Length:2526 Species:Rattus norvegicus


Alignment Length:972 Identity:314/972 - (32%)
Similarity:468/972 - (48%) Gaps:192/972 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 ATRTSRKRTISSTSFSIS-----------TRTDPKSIIEIHIFNDSLPIKRACCEVE-------- 56
            |:|...|||..|.|.|..           |:..||...: ...||   :::...|:|        
  Rat  1600 ASRRKAKRTYESGSESADSDGSESKAEQRTKRQPKPTYK-KKQND---LQKRKGEIEEDLKPNGV 1660

  Fly    57 -NPTLKAEQRVQQEEESLGQVPPLTEEEQQRHDEFRNSGSIFLQDLPCFKLQQAQPIAGSSPIPK 120
             :.:.|.:.:::.:..|...||....::.::..:.:.:|..||||..|.::        ...:.|
  Rat  1661 LSRSAKEKSKLKLQNSSSAGVPRSVLKDWRKVKKLKQTGESFLQDDSCCEI--------GPNLQK 1717

  Fly   121 CRECRRRNLATTEGEPSSVSDVYCRFYEFRRLQFNENGELCVVGFPNPYSEPSPEDIAIWQPDKN 185
            |||||.  :.:.:||.|:.|.|:||||.||||.|::||.:.:.||.:| .:...|.:::|..:..
  Rat  1718 CRECRL--IRSKKGEESTHSPVFCRFYYFRRLSFSKNGVVRIDGFSSP-DQYDDEAMSLWTHENY 1779

  Fly   186 TPPTSGYMDIQVCRYILLHAGDQFCYIWHQEAEALSLHQNTDGTIAWKKAVKGTREICDVCDTTL 250
            ....   :|::..:|||...||:||.:...|..|||..:. |..||||:||:|.||:||.|:.||
  Rat  1780 EDDD---IDVETSKYILDIIGDKFCQLVTSEKTALSWVKK-DAKIAWKRAVRGVREMCDACEATL 1840

  Fly   251 FNYHWTCRKCGFGVCLDCVKDRKEGLRLRRAENAAQKGCDEYHWLLCSDPSGPQEHVLTELMLTQ 315
            ||.||.||||||..||||.|.:         |..:.:..:.|.|:.|. ...|.:|  ..||.||
  Rat  1841 FNVHWVCRKCGFVACLDCYKAK---------ERKSSRDKELYAWMKCV-KGQPHDH--KHLMPTQ 1893

  Fly   316 IIAGDALNVLGRLLHEVRTLWQVPQVCGC------------------------------------ 344
            ||.|..|..|...:|.:|..:.:...|.|                                    
  Rat  1894 IIPGSVLTDLLDAMHVLREKYGIKSHCHCANRQNLQGGNVPTMNGVSQVLQNALHHSNKTSACPP 1958

  Fly   345 ------------------------------------------LLSKQAIEDAQ-------SKEVI 360
                                                      |..:::.|:.|       .||:.
  Rat  1959 ESQQQSTPQRAQANGSSSPGSASTDSRLTPPESQSPLHWLADLAEQKSREEKQENKEFTLEKEIK 2023

  Fly   361 QDMIKESQLKQHTSYSSLASEQKVHQQQRLDQLHAT--KLEF-ARELGVDYVP-----------G 411
            :|..:::....:.|.|..||:.........|.|..|  ||.. :.:.|:.:.|           |
  Rat  2024 EDEEQDTPDSPNGSTSPPASQNSEQGSTLRDLLTTTAGKLRVGSTDAGIAFAPVYSMGASSGKGG 2088

  Fly   412 RVWTKETLGKDPITTAFDNLKHINFLRKGLAGLRRFLPP-------------------RTMTFAY 457
            |  |...:..|.|.:..:|.                :||                   |......
  Rat  2089 R--TMPNILDDIIASVVENK----------------IPPNKTSKINVKSEPNEEPKESRQSATNE 2135

  Fly   458 STQLAPGVPHEFLCDGRLLRLTDAMHPDNRVLFQEVWKCGQPVMISEVARSLNLDLWHPQAFCRD 522
            |.:....:||.::||..:|.|.|..:.:|..||:|.||.|||.::|.|.:.:|:.||..::...|
  Rat  2136 SNKFYRDIPHTWICDQHVLWLKDYKNSNNWKLFKECWKQGQPAVVSGVHKKMNVSLWKAESISLD 2200

  Fly   523 FGDKPNDLINCLNGNLVPNQPMRHFWEGFQCMTKRLPDAYGKPMLLKLKDWPPGDDFAEILPTRF 587
            |||...||:|| ..::|.|..::.||:||:.::||..:..|:.::|||||.|.|:||..::|.|:
  Rat  2201 FGDHQADLLNC-KDSIVSNANVKEFWDGFEEVSKRQKNKGGETVVLKLKDCPSGEDFKTMMPARY 2264

  Fly   588 ADLMKGLPMPEYTLRTGNLNIASCLPKMFVPPDLGPKMYNAYG--SALHPDKGTTNLHLDISDAV 650
            .|.::.||:|||....|..|:||.||..||.|||||::.:|||  :|...|.||||||::.||.|
  Rat  2265 EDFLRSLPLPEYCNPEGKFNLASHLPGFFVRPDLGPRLCSAYGVAAAKDHDIGTTNLHIEASDVV 2329

  Fly   651 NIMVYVGIPQDGDTRPQMAATQKAIEIGGCDYITRARCQSPDVLPGALWHIFPARDADKIRDLLN 715
            |::|||||.: |:.....|...|..|....|.|.|.|.:....:|||||||:..:|.||||:.|.
  Rat  2330 NVLVYVGIAK-GNGVLSKAGILKKFEEEELDDILRKRLKDSSEIPGALWHIYAGKDVDKIREFLQ 2393

  Fly   716 RVTLEKGFRLEPDHDPIHDQNWYLDDKLRARLFKEYGVEGHPIVQCLGDAVFIPAGAPHQVQNLH 780
            :|:.|:|..:.|:|||:.||.||::.:||.||.:||||....:||.||||:.:|||..|||||.|
  Rat  2394 KVSKEQGLEVLPEHDPVRDQGWYVNRRLRQRLLEEYGVRACTLVQFLGDAIVLPAGTLHQVQNFH 2458

  Fly   781 NCIKVAEDFVSPENITHCYHLTHEFRRLSHSHTNHEDKLQIKNIIYHAIKDCCTILTRAVDE 842
            :||:|.|||||||::...:|||.|.|.|. ...|::||||:|||:|||:|:....|....||
  Rat  2459 SCIQVTEDFVSPEHLVQSFHLTQELRLLK-EEINYDDKLQVKNILYHAVKEMVRALKMHEDE 2519

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
JHDM2NP_001287255.1 JmjC 605..657 CDD:214721 29/53 (55%)
cupin_like 694..789 CDD:304367 51/94 (54%)
Jmjd1cXP_006256421.2 RX-CC_like 126..>174 CDD:421994
JmjC 2264..2336 CDD:214721 36/71 (51%)
cupin_RmlC-like 2368..2467 CDD:424065 51/98 (52%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166350570
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1356
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1185631at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm45873
orthoMCL 1 0.900 - - OOG6_102953
Panther 1 1.100 - - O PTHR12549
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X572
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
98.710

Return to query results.
Submit another query.