DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Kdm3 and Kdm3a

DIOPT Version :10

Sequence 1:NP_788611.1 Gene:Kdm3 / 41143 FlyBaseID:FBgn0037703 Length:854 Species:Drosophila melanogaster
Sequence 2:NP_766589.1 Gene:Kdm3a / 104263 MGIID:98847 Length:1323 Species:Mus musculus


Alignment Length:922 Identity:366/922 - (39%)
Similarity:502/922 - (54%) Gaps:134/922 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 QKEL--AALVATRTSRKRTISSTSFSISTRTDPKSIIEIHIFNDSLPIKRACCEVENPTLKAEQR 65
            ||.|  ||..:...|.|..:.:...|:::..: |.:...|:.:.|..:|....:|:|      :.
Mouse   438 QKHLEHAASTSDDLSDKPEVKAGVTSLNSCAE-KKVEPSHLGSQSQNLKETSVKVDN------ES 495

  Fly    66 VQQEEESLGQVPP-----LTEEEQQRHDEFRNSGSIFLQDLPCFKLQQAQPIAGSSPIPKCRECR 125
            ......:..|.||     ||:.::.|  :.:.||..|:||..|..:        .:.:|||||||
Mouse   496 CCTRSSNKTQTPPARKSVLTDPDKVR--KLQQSGEAFVQDDSCVNI--------VAQLPKCRECR 550

  Fly   126 RRNLATTEGEPSSVSDVYCRFYEFRRLQFNENGELCVVGF--PNPYSEPSPEDIAIWQP-DKNTP 187
            ..:|...:.:... |.|:|||:.|||||||::|.|.|.||  ||.|..   |.|.:|.| .||..
Mouse   551 LDSLRKDKDQQKD-SPVFCRFFHFRRLQFNKHGVLRVEGFLTPNKYDS---EAIGLWLPLTKNVV 611

  Fly   188 PTSGYMDIQVCRYILLHAGDQFCYIWHQEAEALSL---HQNTDGTIAWKKAVKGTREICDVCDTT 249
            .|    |:...:|||.:.||.||.:...|.||:|.   |:.    :|||:||||.||:|||||||
Mouse   612 GT----DLDTAKYILANIGDHFCQMVISEKEAMSTIEPHRQ----VAWKRAVKGVREMCDVCDTT 668

  Fly   250 LFNYHWTCRKCGFGVCLDCVKDRKEGLRLRRAENAAQKGCDEYHWLLCSDPSGPQEHVLTELMLT 314
            :||.||.|.:||||||:||.:.:::..:    :.||.|   .:.|:.|..   .|.|....||.|
Mouse   669 IFNLHWVCPRCGFGVCVDCYRMKRKNCQ----QGAAYK---TFSWIRCVK---SQIHEPENLMPT 723

  Fly   315 QIIAGDALNVLGRLLHEVRTLWQVPQVCGC------LLSKQAIED-------AQSKEVIQDMIKE 366
            |||.|.||..:|.::|.||..|.:...|.|      |.||.|:::       :..|..:..|:::
Mouse   724 QIIPGKALYDVGDIVHSVRAKWGIKANCPCSNRQFKLFSKPALKEDLKQTSLSGEKPTLGTMVQQ 788

  Fly   367 -------------------SQLKQ--HTSYSSL-----ASEQKVHQQQRLDQLH----ATKLEFA 401
                               |.:|.  .||.|.|     .:...|:::.:..||.    ..:::..
Mouse   789 SSPVLEPVAVCGEAASKPASSVKPTCPTSTSPLNWLADLTSGNVNKENKEKQLTMPILKNEIKCL 853

  Fly   402 RELGVDYVPGRVWTKETLGKDPITTAFDNLKHINFLR-----------KGLAGLRRFLP------ 449
            ..|.....|..|  ..|.....:|...:|  :..|||           .||....:.|.      
Mouse   854 PPLPPLNKPSTV--LHTFNSTILTPVSNN--NSGFLRNLLNSSTAKTENGLKNTPKILDDIFASL 914

  Fly   450 ------------PRTMTFAYSTQLAPGVPHEFLCDGRLLRLTDAMHPDNRVLFQEVWKCGQPVMI 502
                        |:.:|...|. |....||.:|||.|||.|.|..:..|..:|:|.||.|||||:
Mouse   915 VQNKTSSDSSKRPQGLTIKPSI-LGFDTPHYWLCDNRLLCLQDPNNKSNWNVFRECWKQGQPVMV 978

  Fly   503 SEVARSLNLDLWHPQAFCRDFGDKPNDLINCLNGNLVPNQPMRHFWEGFQCMTKRLP-DAYGKPM 566
            |.|...||.:||.|::|.::||::..||:||....::....:..||:||:.:..||. |...:||
Mouse   979 SGVHHKLNTELWKPESFRKEFGEQEVDLVNCRTNEIITGATVGDFWDGFEDVPNRLKNDKEKEPM 1043

  Fly   567 LLKLKDWPPGDDFAEILPTRFADLMKGLPMPEYTLRTGNLNIASCLPKMFVPPDLGPKMYNAYGS 631
            :|||||||||:||.:::|:||.|||..:|:||||.|.|.||:||.||..||.||||||||||||.
Mouse  1044 VLKLKDWPPGEDFRDMMPSRFDDLMANIPLPEYTRRDGKLNLASRLPNYFVRPDLGPKMYNAYGL 1108

  Fly   632 ALHPDK--GTTNLHLDISDAVNIMVYVGIPQDGDTRPQMAATQKAIEIGGCDYITRARCQSPDVL 694
            ....|:  ||||||||:|||.|:|||||||: |... |.....:.|:.|..|.:|..|.......
Mouse  1109 ITPEDRKYGTTNLHLDVSDAANVMVYVGIPK-GQCE-QEEEVLRTIQDGDSDELTIKRFIEGKEK 1171

  Fly   695 PGALWHIFPARDADKIRDLLNRVTLEKGFRLEPDHDPIHDQNWYLDDKLRARLFKEYGVEGHPIV 759
            |||||||:.|:|.:|||:.|.:|:.|:|.....||||||||:||||..||.||::||||:|..||
Mouse  1172 PGALWHIYAAKDTEKIREFLKKVSEEQGQDNPADHDPIHDQSWYLDRSLRKRLYQEYGVQGWAIV 1236

  Fly   760 QCLGDAVFIPAGAPHQVQNLHNCIKVAEDFVSPENITHCYHLTHEFRRLSHSHTNHEDKLQIKNI 824
            |.|||.|||||||||||.||::||||||||||||::.||:.||.|||.||.:|||||||||:||:
Mouse  1237 QFLGDVVFIPAGAPHQVHNLYSCIKVAEDFVSPEHVKHCFWLTQEFRYLSQTHTNHEDKLQVKNV 1301

  Fly   825 IYHAIKDCCTIL 836
            ||||:||...:|
Mouse  1302 IYHAVKDAVAML 1313

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kdm3NP_788611.1 JmjC 605..657 CDD:214721 36/53 (68%)
cupin_RmlC-like 694..789 CDD:477354 62/94 (66%)
Kdm3aNP_766589.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 255..287
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 307..337
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 385..416
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 468..487 4/19 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 495..517 5/21 (24%)
LXXLL motif 885..889 2/3 (67%)
JmjC 1066..1136 CDD:214721 46/69 (67%)
cupin_RmlC-like 1153..1266 CDD:477354 66/112 (59%)
Blue background indicates that the domain is not in the aligned region.

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