DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment JHDM2 and Kdm3a

DIOPT Version :9

Sequence 1:NP_001287255.1 Gene:JHDM2 / 41143 FlyBaseID:FBgn0037703 Length:854 Species:Drosophila melanogaster
Sequence 2:NP_001033784.2 Gene:Kdm3a / 104263 MGIID:98847 Length:1323 Species:Mus musculus


Alignment Length:922 Identity:366/922 - (39%)
Similarity:502/922 - (54%) Gaps:134/922 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 QKEL--AALVATRTSRKRTISSTSFSISTRTDPKSIIEIHIFNDSLPIKRACCEVENPTLKAEQR 65
            ||.|  ||..:...|.|..:.:...|:::..: |.:...|:.:.|..:|....:|:|      :.
Mouse   438 QKHLEHAASTSDDLSDKPEVKAGVTSLNSCAE-KKVEPSHLGSQSQNLKETSVKVDN------ES 495

  Fly    66 VQQEEESLGQVPP-----LTEEEQQRHDEFRNSGSIFLQDLPCFKLQQAQPIAGSSPIPKCRECR 125
            ......:..|.||     ||:.::.|  :.:.||..|:||..|..:        .:.:|||||||
Mouse   496 CCTRSSNKTQTPPARKSVLTDPDKVR--KLQQSGEAFVQDDSCVNI--------VAQLPKCRECR 550

  Fly   126 RRNLATTEGEPSSVSDVYCRFYEFRRLQFNENGELCVVGF--PNPYSEPSPEDIAIWQP-DKNTP 187
            ..:|...:.:... |.|:|||:.|||||||::|.|.|.||  ||.|..   |.|.:|.| .||..
Mouse   551 LDSLRKDKDQQKD-SPVFCRFFHFRRLQFNKHGVLRVEGFLTPNKYDS---EAIGLWLPLTKNVV 611

  Fly   188 PTSGYMDIQVCRYILLHAGDQFCYIWHQEAEALSL---HQNTDGTIAWKKAVKGTREICDVCDTT 249
            .|    |:...:|||.:.||.||.:...|.||:|.   |:.    :|||:||||.||:|||||||
Mouse   612 GT----DLDTAKYILANIGDHFCQMVISEKEAMSTIEPHRQ----VAWKRAVKGVREMCDVCDTT 668

  Fly   250 LFNYHWTCRKCGFGVCLDCVKDRKEGLRLRRAENAAQKGCDEYHWLLCSDPSGPQEHVLTELMLT 314
            :||.||.|.:||||||:||.:.:::..:    :.||.|   .:.|:.|..   .|.|....||.|
Mouse   669 IFNLHWVCPRCGFGVCVDCYRMKRKNCQ----QGAAYK---TFSWIRCVK---SQIHEPENLMPT 723

  Fly   315 QIIAGDALNVLGRLLHEVRTLWQVPQVCGC------LLSKQAIED-------AQSKEVIQDMIKE 366
            |||.|.||..:|.::|.||..|.:...|.|      |.||.|:::       :..|..:..|:::
Mouse   724 QIIPGKALYDVGDIVHSVRAKWGIKANCPCSNRQFKLFSKPALKEDLKQTSLSGEKPTLGTMVQQ 788

  Fly   367 -------------------SQLKQ--HTSYSSL-----ASEQKVHQQQRLDQLH----ATKLEFA 401
                               |.:|.  .||.|.|     .:...|:::.:..||.    ..:::..
Mouse   789 SSPVLEPVAVCGEAASKPASSVKPTCPTSTSPLNWLADLTSGNVNKENKEKQLTMPILKNEIKCL 853

  Fly   402 RELGVDYVPGRVWTKETLGKDPITTAFDNLKHINFLR-----------KGLAGLRRFLP------ 449
            ..|.....|..|  ..|.....:|...:|  :..|||           .||....:.|.      
Mouse   854 PPLPPLNKPSTV--LHTFNSTILTPVSNN--NSGFLRNLLNSSTAKTENGLKNTPKILDDIFASL 914

  Fly   450 ------------PRTMTFAYSTQLAPGVPHEFLCDGRLLRLTDAMHPDNRVLFQEVWKCGQPVMI 502
                        |:.:|...|. |....||.:|||.|||.|.|..:..|..:|:|.||.|||||:
Mouse   915 VQNKTSSDSSKRPQGLTIKPSI-LGFDTPHYWLCDNRLLCLQDPNNKSNWNVFRECWKQGQPVMV 978

  Fly   503 SEVARSLNLDLWHPQAFCRDFGDKPNDLINCLNGNLVPNQPMRHFWEGFQCMTKRLP-DAYGKPM 566
            |.|...||.:||.|::|.::||::..||:||....::....:..||:||:.:..||. |...:||
Mouse   979 SGVHHKLNTELWKPESFRKEFGEQEVDLVNCRTNEIITGATVGDFWDGFEDVPNRLKNDKEKEPM 1043

  Fly   567 LLKLKDWPPGDDFAEILPTRFADLMKGLPMPEYTLRTGNLNIASCLPKMFVPPDLGPKMYNAYGS 631
            :|||||||||:||.:::|:||.|||..:|:||||.|.|.||:||.||..||.||||||||||||.
Mouse  1044 VLKLKDWPPGEDFRDMMPSRFDDLMANIPLPEYTRRDGKLNLASRLPNYFVRPDLGPKMYNAYGL 1108

  Fly   632 ALHPDK--GTTNLHLDISDAVNIMVYVGIPQDGDTRPQMAATQKAIEIGGCDYITRARCQSPDVL 694
            ....|:  ||||||||:|||.|:|||||||: |... |.....:.|:.|..|.:|..|.......
Mouse  1109 ITPEDRKYGTTNLHLDVSDAANVMVYVGIPK-GQCE-QEEEVLRTIQDGDSDELTIKRFIEGKEK 1171

  Fly   695 PGALWHIFPARDADKIRDLLNRVTLEKGFRLEPDHDPIHDQNWYLDDKLRARLFKEYGVEGHPIV 759
            |||||||:.|:|.:|||:.|.:|:.|:|.....||||||||:||||..||.||::||||:|..||
Mouse  1172 PGALWHIYAAKDTEKIREFLKKVSEEQGQDNPADHDPIHDQSWYLDRSLRKRLYQEYGVQGWAIV 1236

  Fly   760 QCLGDAVFIPAGAPHQVQNLHNCIKVAEDFVSPENITHCYHLTHEFRRLSHSHTNHEDKLQIKNI 824
            |.|||.|||||||||||.||::||||||||||||::.||:.||.|||.||.:|||||||||:||:
Mouse  1237 QFLGDVVFIPAGAPHQVHNLYSCIKVAEDFVSPEHVKHCFWLTQEFRYLSQTHTNHEDKLQVKNV 1301

  Fly   825 IYHAIKDCCTIL 836
            ||||:||...:|
Mouse  1302 IYHAVKDAVAML 1313

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
JHDM2NP_001287255.1 JmjC 605..657 CDD:214721 36/53 (68%)
cupin_like 694..789 CDD:304367 62/94 (66%)
Kdm3aNP_001033784.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 255..287
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 307..337
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 385..416
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 468..487 4/19 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 495..517 5/21 (24%)
Red1 <748..936 CDD:311769 31/191 (16%)
LXXLL motif 885..889 2/3 (67%)
JmjC 1066..1136 CDD:214721 46/69 (67%)
JmjC 1153..1266 CDD:202224 66/112 (59%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167847066
Domainoid 1 1.000 411 1.000 Domainoid score I688
eggNOG 1 0.900 - - E1_KOG1356
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 644 1.000 Inparanoid score I800
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001431
OrthoInspector 1 1.000 - - otm43788
orthoMCL 1 0.900 - - OOG6_102953
Panther 1 1.100 - - O PTHR12549
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R7411
SonicParanoid 1 1.000 - - X572
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1211.780

Return to query results.
Submit another query.