DRSC/TRiP Functional Genomics Resources

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Protein Alignment JHDM2 and jmjd1c

DIOPT Version :9

Sequence 1:NP_001287255.1 Gene:JHDM2 / 41143 FlyBaseID:FBgn0037703 Length:854 Species:Drosophila melanogaster
Sequence 2:XP_031761210.1 Gene:jmjd1c / 100487525 XenbaseID:XB-GENE-1008867 Length:2528 Species:Xenopus tropicalis


Alignment Length:985 Identity:321/985 - (32%)
Similarity:457/985 - (46%) Gaps:228/985 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 TRTSRKRTISSTSFS-----ISTRTDPKSIIEIHIFNDSLPIKRACCEVENPTLKAEQRVQQ--- 68
            ||...|||..|.|.|     ..:|:.|:             :||.    ..||.|.:|...|   
 Frog  1603 TRRRVKRTYESGSESEDSDESESRSGPR-------------LKRQ----PKPTYKKKQNDMQRRK 1650

  Fly    69 -----EEE---------------------SLGQ--VPPLTEEEQQRHDEFRNSGSIFLQDLPCFK 105
                 |||                     |.|.  :|....::.::..:.:.:|..||||..|.:
 Frog  1651 GDTDKEEECKPNGILSRSAKEKSKLKLQSSSGNTGIPRSVLKDWRKVKKLKQTGESFLQDDSCCE 1715

  Fly   106 LQQAQPIAGSSPIPKCRECRRRNLATTEGEPSSVSDVYCRFYEFRRLQFNENGELCVVGFPNPYS 170
            :        ...:.||||||.  :.|.:||.|:.|.|:||||.||||.|::||.:.:.||.:| .
 Frog  1716 I--------GPNLQKCRECRL--IRTKKGEESTHSPVFCRFYYFRRLSFSKNGVVRIDGFSSP-D 1769

  Fly   171 EPSPEDIAIW-----QPDKNTPPTSGYMDIQVCRYILLHAGDQFCYIWHQEAEALSLHQNTDGTI 230
            :...|.:::|     :.|:        :|:...:|||.:.||:||.:...|..|:|..:. |..|
 Frog  1770 QYDDEALSLWSHEHYEDDE--------LDLDTIKYILAYIGDKFCQLGTSEKAAVSWVKK-DAKI 1825

  Fly   231 AWKKAVKGTREICDVCDTTLFNYHWTCRKCGFGVCLDCVKDRKEGLRLRRAENAAQKGCDEYHWL 295
            |||:||:|.||:||.|:.||||.||.|:||||.|||||.|.:         |....:..:.|.|:
 Frog  1826 AWKRAVRGVREMCDACEATLFNIHWVCQKCGFVVCLDCYKAK---------ERKISRDKELYTWM 1881

  Fly   296 LCSDPSGPQEHVLTELMLTQIIAGDALNVLGRLLHEVRTLWQVPQVCGCL--------------- 345
            .|..   .|.|....||.||||....|..|...:|.:|..:.:...|.|.               
 Frog  1882 KCVK---GQPHDYKHLMPTQIIPSSVLTDLLEAMHHLRDRFGIKSHCHCASKPCPPAPKYPAMNG 1943

  Fly   346 -------------------------LSKQAIEDAQSKEVIQDMIKESQLKQHTSYSSL-----AS 380
                                     .|.|..|...:.....|...:|:|....|:|||     .:
 Frog  1944 VSQVLQNVLNHSNKISLCLPESPHQSSPQKPETNGNASPGSDSSTDSKLTSSESHSSLHWLADLA 2008

  Fly   381 EQKVHQQQRLDQLHATKLEFARELGVDYVPGRVWTKE-------------------------TLG 420
            |||..::::.::               ..||....||                         || 
 Frog  2009 EQKSREEKKENK---------------ECPGGKHIKEERDQEVSETVNCKSSPTSHSNEQGSTL- 2057

  Fly   421 KDPITTAFDNLK---------------HINFLRKGLAGLRRFLP-----------PRTMTFAYST 459
            :|.:||....|:               ..|...||...:...|.           |.|.|.....
 Frog  2058 RDLLTTTAGKLRLGSTDAGIAFAPVYSASNPCNKGGRSMPNILDDIIASVVENKIPATKTPKPIV 2122

  Fly   460 QLAP-----------------GVPHEFLCDGRLLRLTDAMHPDNRVLFQEVWKCGQPVMISEVAR 507
            |..|                 .:||.::||..:|.|.|..|..|..:|||.||.|:.|::|...:
 Frog  2123 QSEPKEEIVEVPLEEPETEHQEIPHSWICDRHILWLKDHKHSRNWKMFQECWKQGKTVVVSGTHK 2187

  Fly   508 SLNLDLWHPQAFCRDFGDKPNDLINCLNGNLVPNQPMRHFWEGFQCMTKRLPDAYGKPMLLKLKD 572
            .:|.:||..:|...||||...||:||..| :|.:..:..|||||:.::||.....|:.:||||||
 Frog  2188 RMNANLWKLEAISSDFGDHQGDLLNCKEG-IVSSGNVTDFWEGFEDVSKRQKVKNGETVLLKLKD 2251

  Fly   573 WPPGDDFAEILPTRFADLMKGLPMPEYTLRTGNLNIASCLPKMFVPPDLGPKMYNAYG--SALHP 635
            .|.|:||..::..|..:..|.||:|||....|..|:||.:|..||.|||||:|.:|||  :....
 Frog  2252 QPSGEDFKNMMLARHEEFFKMLPVPEYCNPDGKFNLASHMPSFFVRPDLGPRMCSAYGVIATKDQ 2316

  Fly   636 DKGTTNLHLDISDAVNIMVYVGIPQDGDTRPQMAATQKAIEIGGCDYITRARCQSPDVLPGALWH 700
            |.||||||:::||.|||:||||..:.....|:....:| .|....|...|.|.:....:||:|||
 Frog  2317 DTGTTNLHIEVSDLVNILVYVGAAKGLGVMPKSGVLKK-FEEEELDEHLRKRLKDSGEVPGSLWH 2380

  Fly   701 IFPARDADKIRDLLNRVTLEKGFRLEPDHDPIHDQNWYLDDKLRARLFKEYGVEGHPIVQCLGDA 765
            |:..|||||||:.|::...|:...:.||||||.||||||..|||..|.::|||:.:.:||.||||
 Frog  2381 IYETRDADKIREFLHKAAKEQCLEILPDHDPIRDQNWYLSKKLRQSLLEDYGVKSYTLVQFLGDA 2445

  Fly   766 VFIPAGAPHQVQNLHNCIKVAEDFVSPENITHCYHLTHEFRRLSHSHTNHEDKLQIKNIIYHAIK 830
            |.:||||.:||||.|:||:|.:||||||::...:|||.|.|. |....|::||||:|||:||::|
 Frog  2446 VILPAGAIYQVQNFHSCIQVTQDFVSPEHLVQSFHLTQELRH-SKEEINYDDKLQVKNILYHSVK 2509

  Fly   831 DCCTILTRAV 840
            :    :.||:
 Frog  2510 E----MVRAL 2515

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
JHDM2NP_001287255.1 JmjC 605..657 CDD:214721 29/53 (55%)
cupin_like 694..789 CDD:304367 53/94 (56%)
jmjd1cXP_031761210.1 KLF1_2_4_N <1118..1252 CDD:425360
JmjC 2266..2338 CDD:214721 36/71 (51%)
cupin_RmlC-like <2379..2469 CDD:424065 50/89 (56%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 425 1.000 Domainoid score I610
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 639 1.000 Inparanoid score I810
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1185631at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm48962
Panther 1 1.100 - - O PTHR12549
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X572
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.160

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