DRSC/TRiP Functional Genomics Resources

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Protein Alignment JHDM2 and kdm3a

DIOPT Version :9

Sequence 1:NP_001287255.1 Gene:JHDM2 / 41143 FlyBaseID:FBgn0037703 Length:854 Species:Drosophila melanogaster
Sequence 2:XP_002937329.2 Gene:kdm3a / 100379807 XenbaseID:XB-GENE-1012801 Length:1336 Species:Xenopus tropicalis


Alignment Length:910 Identity:355/910 - (39%)
Similarity:489/910 - (53%) Gaps:130/910 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 KRTISSTSFSISTRTDP-KSIIEIHIFNDSLPIKRACCEVENPTLKAEQRVQQEEES-------- 72
            |.|:....|..|.::.| :.::.:.....:.|.| .|.:.:.     ||:|.::.|:        
 Frog   457 KSTVFPKGFEFSVKSFPEQKMLSVTDSPKTSPPK-VCVQQQQ-----EQKVVKKPENNHTSVKAV 515

  Fly    73 LGQVPPLTEE---------------EQQRHDEFRNSGSIFLQDLPCFKLQQAQPIAGSSPIPKCR 122
            ..|.||..:.               :.|:....:.||..|:||..|..:        :..:.|||
 Frog   516 QSQEPPYPKSPNKNDGVTYPRSILLDPQKLKRLQQSGDCFVQDGSCNDI--------APHLHKCR 572

  Fly   123 ECRRRNLATTEGEPSSVSDVYCRFYEFRRLQFNENGELCVVGF--PNPYSEPSPEDIAIWQPDKN 185
            |||......:..:..|.  |:|||:.||||.||::|.|...||  ||.|   ..|.|.:|.|..:
 Frog   573 ECRLDRFGRSREQRDSA--VFCRFFHFRRLHFNKHGMLKEGGFLTPNKY---DAEAINLWLPLAS 632

  Fly   186 TPPTSGYMDIQVCRYILLHAGDQFCYIWHQEAEALSLHQNTDGTIAWKKAVKGTREICDVCDTTL 250
            :...   :|:...:|||.:.||.||.:...|.|.:|. .:....:|||:||:|.||:|||||||:
 Frog   633 SVVD---LDLDTAKYILANIGDHFCKLVMSEKEVMSA-IDPSKQVAWKRAVRGVREMCDVCDTTI 693

  Fly   251 FNYHWTCRKCGFGVCLDCVKDRKEGLRLRRAENAAQKGCDEYHWLLCSDPSGPQEHVLTELMLTQ 315
            ||.||.|.|||||||:||.:.:|:.|      ::.:.|.:.:.||.|..   .|.|....||.||
 Frog   694 FNLHWVCPKCGFGVCVDCYRMKKKSL------SSGEDGNESFSWLKCVK---GQLHEPENLMPTQ 749

  Fly   316 IIAGDALNVLGRLLHEVRTLWQVPQVCGCLLSKQAIEDAQSKEVIQDMIKESQLKQHTSYS---- 376
            |:.|.||:.:|.::|.||..|.:..  .||.|.:.:... .|.|:::.:|.|..:.....:    
 Frog   750 IVPGRALSDVGDIVHSVRGRWGIKS--NCLCSNKHVRPV-PKPVVKEEVKMSTPEPEPPKAPLAQ 811

  Fly   377 -----------------SLASEQKVHQQQRLDQLHATKLE----FARELGVDYVP-------GR- 412
                             :|||...:.....|.|....|..    ||.....::.|       |: 
 Frog   812 PNVCTAPDPPVITNKPITLASSSPLSWLTNLSQTTVNKENKDNLFASVSKSEHKPLPSFASFGKP 876

  Fly   413 VWTKETLGKDPITTAFDNLKHINFLRKGL------AGLRRFLPPRTM--TFAYSTQLAP------ 463
            |...:|.|...:|....|  :..|||..|      .|......|:.:  .||...|..|      
 Frog   877 VSALQTFGSSILTPTTSN--NSGFLRNLLNSSTIKQGTNEKSTPKLLDDIFASLVQSRPLSDFAR 939

  Fly   464 --------------GVPHEFLCDGRLLRLTDAMHPDNRVLFQEVWKCGQPVMISEVARSLNLDLW 514
                          ..||.:|||.|||.|.|..:..|..:|:|.||.|||||:|.|..:||.:||
 Frog   940 KPQGLPIQPSLMGFNTPHYWLCDNRLLCLQDPNNKSNWNVFRECWKQGQPVMVSGVHNTLNSELW 1004

  Fly   515 HPQAFCRDFGDKPNDLINCLNGNLVPNQPMRHFWEGFQCMTKRLPDAYGKPMLLKLKDWPPGDDF 579
            .|::|.|:|||:..||:||...:::....:..||:||:.::.||.:..|..|:|||||||||:||
 Frog  1005 RPESFRREFGDQEADLVNCRTNDIITGATVGDFWDGFEDISSRLKNDTGDAMVLKLKDWPPGEDF 1069

  Fly   580 AEILPTRFADLMKGLPMPEYTLRTGNLNIASCLPKMFVPPDLGPKMYNAYGSALHPDK--GTTNL 642
            .:::.:||.|||..:|:||||.|.|.||:|:.||..||.||||||||||||.....|:  |||||
 Frog  1070 RDMMFSRFEDLMNNIPLPEYTRREGKLNLAARLPTYFVRPDLGPKMYNAYGLITPEDRKYGTTNL 1134

  Fly   643 HLDISDAVNIMVYVGIPQ-DGDTRPQMAATQKAIEIGGCDYITRARCQSPDVLPGALWHIFPARD 706
            |||:|||.|:|||||||: :.|...::..|   |:.|..|.:|..|.......||||||||.|:|
 Frog  1135 HLDVSDAANVMVYVGIPKGEHDQEQEVLRT---IQDGDADELTIKRFIEFKEKPGALWHIFAAKD 1196

  Fly   707 ADKIRDLLNRVTLEKGFRLEPDHDPIHDQNWYLDDKLRARLFKEYGVEGHPIVQCLGDAVFIPAG 771
            .:|||..|.:|..|:|....|||||||||:||||:.||.||.:|:||:|..|||.||||||||||
 Frog  1197 TEKIRQFLKKVAEEQGHENPPDHDPIHDQSWYLDNALRKRLLQEHGVQGWAIVQFLGDAVFIPAG 1261

  Fly   772 APHQVQNLHNCIKVAEDFVSPENITHCYHLTHEFRRLSHSHTNHEDKLQIKNIIYHAIKDCCTIL 836
            |||||.||::||||||||||||::.||:.||.|||.|||:|||||||||:||:||||:||...||
 Frog  1262 APHQVHNLYSCIKVAEDFVSPEHVKHCFSLTQEFRYLSHTHTNHEDKLQVKNVIYHAVKDSIAIL 1326

  Fly   837  836
             Frog  1327  1326

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
JHDM2NP_001287255.1 JmjC 605..657 CDD:214721 35/53 (66%)
cupin_like 694..789 CDD:304367 64/94 (68%)
kdm3aXP_002937329.2 C1_2 <686..711 CDD:367338 19/24 (79%)
JmjC 1077..1149 CDD:214721 46/71 (65%)
cupin_RmlC-like 1166..1279 CDD:424065 68/112 (61%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 425 1.000 Domainoid score I610
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 639 1.000 Inparanoid score I810
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1185631at2759
OrthoFinder 1 1.000 - - FOG0001431
OrthoInspector 1 1.000 - - otm48962
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R7411
SonicParanoid 1 1.000 - - X572
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.090

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