DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rlb1 and F18C12.3

DIOPT Version :9

Sequence 1:NP_477099.1 Gene:Rlb1 / 41139 FlyBaseID:FBgn0014022 Length:463 Species:Drosophila melanogaster
Sequence 2:NP_492224.1 Gene:F18C12.3 / 172595 WormBaseID:WBGene00008934 Length:545 Species:Caenorhabditis elegans


Alignment Length:463 Identity:98/463 - (21%)
Similarity:196/463 - (42%) Gaps:87/463 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 KFNNLVISNKKVIQKARAQTIAKIVQKLRKTKEALAKNPDSEKEKIRLRKNTECLAQLKALKYMD 69
            |.||.:::.:.....|:.|.:::||::.::.:...::..|.:.::.|.||....:.::..||..|
 Worm   110 KLNNELVALRATCLTAKNQLMSRIVRQKKQLESKKSQKVDGKSKEERDRKIARLVEEILGLKTFD 174

  Fly    70 MVRQSLLQEGTNPNAVIANERSTPDELGIAMLRLN-------KLMHGLVDKFVETLKL-STTDKE 126
              :.|:.:      ....|.:|      :|.|::|       :||:.||.:.:...|: |..:|.
 Worm   175 --KDSVAK------FAALNTKS------LAELKINGKTEVAERLMYKLVCQSIIVEKIQSIREKY 225

  Fly   127 AKWREEILETSKRRA-----KIERTEERKRKRKELK-EQKAQTKNRLEWLEQNKVVDADVNGATA 185
            .:|.:......:|..     |.|:..::..::|||. |......|..|..|..|..:.:.|....
 Worm   226 TEWNKTAAFFMQRLGQQYANKPEKKSKKSTEKKELNIENLEDLNNEDEDSENEKEEEIEENEEDY 290

  Fly   186 ETPTLQVSKVNDQEIPQSFAKTENSPVL---KVKKEKTPKTPAKKERNLQKKQAFDEQINPEITK 247
            :...:::...:::|..:..||...:.:|   .|:::|...:.|.|:|.|.:::  ||::      
 Worm   291 DQSDIEMLDSDEEEAGEEAAKNRRNLLLGLIGVQEDKNRPSLAPKKRKLVEEE--DEEV------ 347

  Fly   248 LSSKKQNLNTIKENNAEPQL---EGRPKESK-PKPFEKKPAREQKPKPRLER--QPSIDEEEPQL 306
                    .|:|......|:   |.:.||.| ||...|...:..|..|.:::  :..::|.|...
 Worm   348 --------ETVKNQKKMKQIFEKELKSKEVKNPKKSNKSTKKPTKSAPIVKKVEEKKVEENEVSD 404

  Fly   307 DNNRPTHVVDPFFITESG-----QPYLSSA-----VVLSGDNDSEADEEQ-----------APP- 349
            |.:....:|....:::.|     |.:.::|     :|.....|...|:|.           ||. 
 Worm   405 DESDQKTLVMKVDLSKGGKIAKAQKFSTTAPKSAKIVAPVSEDENDDDESSSFFLPKSGVVAPRK 469

  Fly   350 --PVKRFRNEDRRSNTYREKPERQPEFKARKP--------TDDRHPSWLAKQQQKPIIGDFR--G 402
              |.|...|.::....:::..:::.|....|.        :.:.||||:|.|.:|..:...:  |
 Worm   470 IIPKKPSENVEKVDKRFQKGTQKKSEAVVEKKKGSSKSAVSGEMHPSWIASQLKKKELASAKPCG 534

  Fly   403 KKITFGDD 410
            ||||||||
 Worm   535 KKITFGDD 542

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rlb1NP_477099.1 PTZ00108 <3..345 CDD:240271 74/372 (20%)
BUD22 <389..461 CDD:286199 12/24 (50%)
F18C12.3NP_492224.1 BUD22 116..539 CDD:286199 90/452 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR23325
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
22.060

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