Protein Alignment rump and MRD1

DIOPT Version :9

• Sequence 1: NP_649899.1
• Gene: rump / 41138
• FlyBaseID: FBgn0267790
• Length: 632
• Species: Drosophila melanogaster
• Sequence 2: NP_015437.1
• Gene: MRD1 / 856228
• SGDID: S000006316
• Length: 887
• Species: Saccharomyces cerevisiae
• Alignment Length: 527
• Identity: 103/527 - (19%)
• Similarity: 178/527 - (33%)
• Gaps: 143/527 - (27%)

  Fly   221 LESLGISGPLHNKVFVANLDYKVDNKKLKQVFKLAGKVQSVDLSLD-KEGNSRGFAVIEYDHPVE 284
            :|.:..:|    ::|:.|:.|....:..:::|...|:::.|.::|| :.|.|:|||.:.:.....
Yeast   338 IEKINQTG----RLFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFAYVLFKDSKN 398

  Fly   285 AVQAISMLDRQMLFDRRMTV---------RLDRIPDKNEGIKLPEG------------------- 321
            ||.|...||:|:...|.:.:         |||....||..:|..:.
Yeast   399 AVNAYVELDKQIFQGRLLHILPGEEKKSHRLDEFDLKNMPLKKQKELKRKAAASRQTFSWNSLYM 463

  Fly   322 -----LGGVGIGLGPNGEPLRDVAHNLPNGGQ--SQGQLLGNAQ-----------QGSQLGSVGS 368
                 ||.|...||.....|.|..::.....|  ::..::|:.:           :.|||.|...
Yeast   464 NQDAVLGSVAAKLGLEKSQLIDAENSSSAVKQALAEAHVIGDVRKYFESKGVDLTKFSQLKSTNQ 528

  Fly   369 QPNS-SAVSNATTNLLNNLTGVMF--------------GNHAAVQ-------------------- 398
            :.:. ..|.|..........|.||              |..|.||
Yeast   529 RDDKVILVKNFPFGTTREELGEMFLPYGKLERLLMPPAGTIAIVQFRDTTSARAAFTKLSYKRFK 593

  Fly   399 ---------PSP--VAPVQKPSLGNNTGS-GGLNLNNLNPSILAAVVGNLGNQGGN--------L 443
                     |..  ..|.:...|.|||.: ...|...:.||....:..|.....|:        :
Yeast   594 DGIIYLERGPKDCFTKPAEADDLINNTSAKEEENPVEVKPSSNDLMEANKDVTEGSSNAHDEDVI 658

  Fly   444 SNPLLSSSLSNLGLNLGNSGNDDNLPPSNVGLSNNYS--SGGTGGGNSYSSGNNYSGGGGSSNLG 506
            ..|.:|..:.||           |...:|..|::.:.  :|.............:.|...|...|
Yeast   659 DGPTVSIFIKNL-----------NFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKHQGKTLSMGFG 712

  Fly   507 YNAY---SSSGGMGGGNGGVGVDGNDYNTGNPLDV-YGGGSNVGNSNVGSANAVGASRKSDTIII 567
            :..:   ..:..:.....|..:||:...    |.: :...|..||:...|      ::||..||:
Yeast   713 FVEFRTKEQANAVIAAMDGTVIDGHKIQ----LKLSHRQASQSGNTKTKS------NKKSGKIIV 767

  Fly   568 KNVPITCTWQTLRDKFREIGDVKFAEI--------RGNDVGVVRFFKERDAELAIALMDGSRLDG 624
            ||:|...|.:.:.:.|...|.:|...:        ||  ...|.|...::||.|:..:.|..|.|
Yeast   768 KNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARG--FAFVEFLLPKEAENAMDQLHGVHLLG 830

  Fly   625 RNIKVTY 631
            |.:.:.|
Yeast   831 RRLVMQY 837

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
rump	NP_649899.1	PABP-1234	48..435	CDD:130689	59/307 (19%)
		RRM1_hnRNPM_like	58..133	CDD:240831
		RRM2_hnRNPM_like	234..307	CDD:240832	21/82 (26%)
		RRM	<543..>631	CDD:223796	26/95 (27%)
		RRM_SF	565..630	CDD:302621	20/72 (28%)
MRD1	NP_015437.1	RRM4_MRD1	663..746	CDD:409758	14/97 (14%)
		RRM5_MRD1	763..837	CDD:241014	20/75 (27%)
		RRM1_RBM19_MRD1	2..92	CDD:409754
		RRM	222..612	CDD:223796	52/277 (19%)
		RRM2_MRD1	343..421	CDD:409982	21/81 (26%)
		RRM3_MRD1	532..603	CDD:241012	9/70 (13%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR23003
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	1.100