DRSC/TRiP Functional Genomics Resources

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Protein Alignment rump and SNP1

DIOPT Version :10

Sequence 1:NP_649899.1 Gene:rump / 41138 FlyBaseID:FBgn0267790 Length:632 Species:Drosophila melanogaster
Sequence 2:NP_012203.1 Gene:SNP1 / 854749 SGDID:S000001323 Length:300 Species:Saccharomyces cerevisiae


Alignment Length:177 Identity:44/177 - (24%)
Similarity:76/177 - (42%) Gaps:49/177 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 VYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFDE-SGKARGCGIVEFKDPENVQKALEKMNRY- 121
            ::|..:|||....:|:..|.:. |.||.:::..|: :.|::|...:.||||.:.:.|.:::..: 
Yeast   109 IFIGRLPYDLDEIELQKYFVKF-GEIEKIRIVKDKITQKSKGYAFIVFKDPISSKMAFKEIGVHR 172

  Fly   122 --EVNGRELVVKEDHGEQRDQYGRIVRDGGGGGGGGGGVQGGNGGNNGGGGGGGRDHMDDRDRGF 184
              ::..|..:|..:.| :..:|.:..|.|||.||                            ||:
Yeast   173 GIQIKDRICIVDIERG-RTVKYFKPRRLGGGLGG----------------------------RGY 208

  Fly   185 SRRDDDRLSGR----NNFNMMSNDY--------NNSSNYNL--YGLS 217
            |.| |.||.||    :..|....:|        .:||.|:.  ||.|
Yeast   209 SNR-DSRLPGRFASASTSNPAERNYAPRLPRRETSSSAYSADRYGSS 254

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rumpNP_649899.1 PABP-1234 48..435 CDD:130689 44/177 (25%)
RRM1_hnRNPM_like 58..133 CDD:409819 19/77 (25%)
RRM2_hnRNPM_like 234..307 CDD:409820
RRM_SF 565..629 CDD:473069
SNP1NP_012203.1 U1snRNP70_N 6..97 CDD:432406
RRM_SNP1_like 89..201 CDD:410194 22/93 (24%)
Blue background indicates that the domain is not in the aligned region.

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