DRSC/TRiP Functional Genomics Resources

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Protein Alignment rump and PTI1

DIOPT Version :9

Sequence 1:NP_649899.1 Gene:rump / 41138 FlyBaseID:FBgn0267790 Length:632 Species:Drosophila melanogaster
Sequence 2:NP_011672.1 Gene:PTI1 / 853060 SGDID:S000003388 Length:425 Species:Saccharomyces cerevisiae


Alignment Length:234 Identity:56/234 - (23%)
Similarity:87/234 - (37%) Gaps:50/234 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   196 NNFNMMSNDYNNSSNYNLYGLSASFLE-----SLGISGPLHNKVFVANLDYKVDNKKLK-QVFKL 254
            :|..::||..|...:.     ..|||:     ::.::..|....|:   ||.|..|.|| ||   
Yeast   206 SNLKILSNQENIQKSQ-----LESFLDTNSDITISVTQALLEMGFI---DYSVVTKVLKSQV--- 259

  Fly   255 AGKVQSVDLSLDKEGNSRGFAVIEYDHPVEA-VQAISMLDRQMLFDRRMTVRLDRIPDKNEGIKL 318
             |:..|:..|.:...::...:||..:.|:.. ...:|.....|..:..|.:.:...|    .|.|
Yeast   260 -GEAPSLLSSNNTSNSNTPVSVIRNNTPLHVPSNEVSNNPNNMPLNVAMPMPMSTPP----FIPL 319

  Fly   319 PEGLGGVGIGLGPNGEPLRDVAHNLPNGGQSQGQLLGNAQQGSQLGSVGSQPNSSAVSNATTNLL 383
            |  |.....|..|.|          |....:||..:|.....:|||.|..|..||....:..|..
Yeast   320 P--LQQQPFGFAPPG----------PFMPPAQGPSMGQPVLANQLGQVQQQNISSTEGPSNANKA 372

  Fly   384 NNLTGVMFGNHAAVQPSP------------VAPVQKPSL 410
            |: :|.:  |.|.:|..|            :.|.|..||
Yeast   373 ND-SGTI--NMAKLQLLPENQQDMIKQVLTLTPAQIQSL 408

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rumpNP_649899.1 PABP-1234 48..435 CDD:130689 56/234 (24%)
RRM1_hnRNPM_like 58..133 CDD:240831
RRM2_hnRNPM_like 234..307 CDD:240832 18/74 (24%)
RRM <543..>631 CDD:223796
RRM_SF 565..630 CDD:302621
PTI1NP_011672.1 RRM 21..90 CDD:214636
CSTF2_hinge 185..255 CDD:405077 13/56 (23%)
PABP-1234 <306..413 CDD:130689 31/122 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0724
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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