DRSC/TRiP Functional Genomics Resources

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Protein Alignment rump and NPL3

DIOPT Version :10

Sequence 1:NP_649899.1 Gene:rump / 41138 FlyBaseID:FBgn0267790 Length:632 Species:Drosophila melanogaster
Sequence 2:NP_010720.3 Gene:NPL3 / 852042 SGDID:S000002840 Length:414 Species:Saccharomyces cerevisiae


Alignment Length:212 Identity:63/212 - (29%)
Similarity:79/212 - (37%) Gaps:62/212 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 RVYISNIPYDYRWQDLKDLFRRIVGSIEYVQLF-------FDESGKARGCGIVEFKDPENVQKAL 115
            |:.:.|:|....|||||||.|.  .|:|  ..|       ||      |.|.:||...|.:.:||
Yeast   201 RITMKNLPEGCSWQDLKDLARE--NSLE--TTFSSVNTRDFD------GTGALEFPSEEILVEAL 255

  Fly   116 EKMNRYEVNGRELVVKEDH-----------------------------GEQRDQYGRIVRDGGGG 151
            |::|..|..|..:.|:.|.                             |..|..:|. .|.|.||
Yeast   256 ERLNNIEFRGSVITVERDDNPPPIRRSNRGGFRGRGGFRGGFRGGFRGGFSRGGFGG-PRGGFGG 319

  Fly   152 --GGGGGGVQGGNGGNNGGGGGGGRDHMDDRDRGFSRRDDDRLSG--RNNFNMMSNDYNNSSNYN 212
              ||.||..:||.||.:.||.||.|...|....|:    |....|  |..:....|||....  .
Yeast   320 PRGGYGGYSRGGYGGYSRGGYGGSRGGYDSPRGGY----DSPRGGYSRGGYGGPRNDYGPPR--G 378

  Fly   213 LYGLSASFLESLGISGP 229
            .||.|..     |..||
Yeast   379 SYGGSRG-----GYDGP 390

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rumpNP_649899.1 PABP-1234 48..435 CDD:130689 63/212 (30%)
RRM1_hnRNPM_like 58..133 CDD:409819 28/81 (35%)
RRM2_hnRNPM_like 234..307 CDD:409820
RRM_SF 565..629 CDD:473069
NPL3NP_010720.3 PHA03247 <11..87 CDD:223021
RBD_RRM1_NPL3 126..192 CDD:409777
RRM2_SRSF1_4_like 200..271 CDD:409776 27/79 (34%)
Blue background indicates that the domain is not in the aligned region.

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